1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ACCTGAAGGATGCAAGTGGTCAAACAAACCAATCCAGCAGATTGGCCCATATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAGgtacttaagtgttttctaatttgttcatgtaatgacatttggccgacgcataaaaagctaatataatagaggcacccctcatctgatagattgcttacaa...
species | Oryza sativa |
transcript | LOC_Os02g47410.2 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: ATTGCAAACTCAAACTCTTTATCCATGAATCAAAG AGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTACEST: gi|87039717|gb|CI194339.1|CI194339
genomic: ATTGCAAACTCAAACTCTTTATCCATGAATCAAAGgtacttaagt ... tttcctatagAGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTAC
EST: AACTCTTTATCCATGAATCAAAG AGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTACEST: gi|87038519|gb|CI193141.1|CI193141
genomic: AACTCTTTATCCATGAATCAAAGgtacttaagt ... tttcctatagAGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTAC
EST: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAG AGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTACEST: gi|29638403|gb|CB643412.1|CB643412
genomic: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAGgtacttaagt ... tttcctatagAGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTAC
EST: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAG AGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTACEST: gi|87041686|gb|CI196308.1|CI196308
genomic: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAGgtacttaagt ... tttcctatagAGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTAC
EST: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAG AGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTACEST: gi|87040692|gb|CI195314.1|CI195314
genomic: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAGgtacttaagt ... tttcctatagAGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTAC
EST: CTCTTTATCCATGAATCAAAG AGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTACEST: gi|58601341|gb|CK011869.1|CK011869
genomic: CTCTTTATCCATGAATCAAAGgtacttaagt ... tttcctatagAGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTAC
EST: ATCCAAAGCCATGCTATTGCAAACTCAAACGCTGTATCCATGAATCAAAG AGGTGACCACCTGTTCCATGCATCAACTCTTACAGAGACTAGTGCCTCTACEST: gi|87016346|gb|CI271757.1|CI271757
genomic: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAGgtacttaagt ... tttcctatagAGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTAC
EST: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAG AGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGT-GTGCCTCTACEST: gi|29622303|gb|CB627314.1|CB627314
genomic: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAGgtacttaagt ... tttcctatagAGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTAC
EST: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAG AGGTGACCACCTGTTCCATGCATCAACTCTTACAGAGACTAGTGCCTCTACEST: gi|87040709|gb|CI195331.1|CI195331
genomic: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAGgtacttaagt ... tttcctatagAGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTAC
EST: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAG AGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTACEST: gi|218498653|gb|FG968593.1|FG968593
genomic: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAGgtacttaagt ... tttcctatagAGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTAC
EST: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAG AGGTGACCACCTGTTCCATGCATCAACTCTTACAGAGACTAGTGCCTCTACEST: gi|87018950|gb|CI256835.1|CI256835
genomic: ATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAGgtacttaagt ... tttcctatagAGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTAC
EST: ATTGCAAACTCGAACTCTTTATCCATGAATCAAAG AGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTAC
genomic: ATTGCAAACTCAAACTCTTTATCCATGAATCAAAGgtacttaagt ... tttcctatagAGGTGACCGCCTGTTCCATGCATCAACTCTTACAGAGAGTAGTGCCTCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTGAAGGATGCAAGTGGTCAAACAAACCAATCCAGCAGATTGGCCCATATCCAAAGCCATGCTATTGCAAACTCAAACTCTTTATCCATGAATCAAAGgtacttaagtgttttctaatttgttcatgtaatgacatttggccgacgcataaaaagctaatataatagaggcacccctcatctgatagattgcttacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccgacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacccc