1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ATGGCTATGGTGTGAATCTTGGTGTGGAAATGCCACAAAGGCAAGAGCAAAAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattattttgcagtaatagtccatattttgtttcctgtttcttgtctagaactaattttaaggttataaatcgactttctag
species | Oryza sativa |
transcript | LOC_Os02g44510.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAG GGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGEST: gi|428266|gb|D24414.1|D24414
genomic: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattat ... gactttctagGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGG
EST: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAG GGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTEST: gi|29641327|gb|CB646334.1|CB646334
genomic: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattat ... gactttctagGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGT
EST: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAG GGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGEST: gi|29676304|gb|CB672579.1|CB672579
genomic: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattat ... gactttctagGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGG
EST: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAG GGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGEST: gi|29629314|gb|CB634325.1|CB634325
genomic: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattat ... gactttctagGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGG
EST: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAG GGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGEST: gi|38483289|gb|CF967091.1|CF967091
genomic: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattat ... gactttctagGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGG
EST: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAG GGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGEST: gi|58594812|gb|CF993120.1|CF993120
genomic: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattat ... gactttctagGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGG
EST: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAG GGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGEST: gi|218480649|gb|FG956875.1|FG956875
genomic: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattat ... gactttctagGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGG
EST: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAG GGTGCCAAAAGAATTGTTEST: gi|58692422|gb|CK081109.1|CK081109
genomic: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattat ... gactttctagGGTGCCAAAAGAATTGTT
EST: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAG GGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGEST: gi|218479382|gb|FG952388.1|FG952388
genomic: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattat ... gactttctagGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGG
EST: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAG GGTGCCAAAAGAATTGTTCCAGAGTGGGTTGGATCTTGACAGTGAAGCAAGEST: gi|218505372|gb|FG952963.1|FG952963
genomic: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattat ... gactttctagGGTGCCAAAAGAATTGTTCCAGAGTGGGTT-GATCTTGACAGTGAAGCAAG
EST: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAG GGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGGEST: gi|27545628|gb|CA767112.2|CA767112
genomic: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattat ... gactttctagGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGG
EST: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAG GGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGG
genomic: AAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattat ... gactttctagGGTGCCAAAAGAATTGTTCCAGAGTGGGTTGATCTTGACAGTGAAGCAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGCTATGGTGTGAATCTTGGTGTGGAAATGCCACAAAGGCAAGAGCAAAAACCATTGATCTTTGCAACAACCCAATGACAAAGGAGCCAAAGCTTCAGgtaaaattattttgcagtaatagtccatattttgtttcctgtttcttgtctagaactaattttaaggttataaatcgactttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG