1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CAATACTGAAAATTATGAGGTTATCACTGCTGATAGAGCAATAGATGAGAGCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTGgtacgttctataactaattttgtttattactctttgatggctttccttgctgctgcctgtatttgaataattctttctggtgtccgtttttgtttgtcca...
species | Oryza sativa |
transcript | LOC_Os02g07070.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTG GGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCTEST: gi|88473505|gb|CI410776.1|CI410776
genomic: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTGgtacgttcta ... aaatattcagGGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCT
EST: GCAATNTGGGCCATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTG GGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGGTGCAGGCTAAATCEST: gi|5002727|gb|AU067836.1|AU067836
genomic: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTGgtacgttcta ... aaatattcagGGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCA-GTGCAGGCTAAATC
EST: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTG GGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCTEST: gi|29628858|gb|CB633869.1|CB633869
genomic: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTGgtacgttcta ... aaatattcagGGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCT
EST: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTG GGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCTEST: gi|11442773|gb|BF430675.1|BF430675
genomic: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTGgtacgttcta ... aaatattcagGGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCT
EST: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTG GGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCTEST: gi|87023328|gb|CI272156.1|CI272156
genomic: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTGgtacgttcta ... aaatattcagGGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCT
EST: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTG GGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCTEST: gi|13896949|gb|AU183285.1|AU183285
genomic: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTGgtacgttcta ... aaatattcagGGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCT
EST: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTG GGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCTEST: gi|86414717|gb|CI069120.1|CI069120
genomic: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTGgtacgttcta ... aaatattcagGGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCT
EST: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTG GGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCTEST: gi|87021461|gb|CI274068.1|CI274068
genomic: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTGgtacgttcta ... aaatattcagGGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCT
EST: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTG GGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCT
genomic: GCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTGgtacgttcta ... aaatattcagGGTCTCGGAAAAACTGGTAGTGGCATCAAGGAACCAGTGCAGGCTAAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATACTGAAAATTATGAGGTTATCACTGCTGATAGAGCAATAGATGAGAGCAATGTGGGCAATCGTATTCTGCGCAATATGGGTTGGCAAGAAGGACTGgtacgttctataactaattttgtttattactctttgatggctttccttgctgctgcctgtatttgaataattctttctggtgtccgtttttgtttgtcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG