Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgttagtcactgctatgcacttcatttctgccattttgtatcaaatgtttgacacgaggttttttgtgtggtgacag

Basic information

species Oryza sativa
transcript LOC_Os02g02750.2
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02750.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G466281_T03 (Zea mays), 5'ss of exon 4
TGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgttagtcactgctatgcacttcatttctgccattttgtatcaaatgtttgacacgaggttttttgtgtggtgacag
||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||||||| || |||||||||||| |  |  |||           ||      ||   | |   ||||  |  ||||| | | | || |  ||||       
TGGCTCTGTACATGCATTTTGCTACATCAGTTATTCATGAGATCACCAATGCACTCGGGATCCACTGCTTCAGgttt-taatcctcatcttctcatcttttgcacatgtt-tgtaccatcagttagttgacgcaaagcttgtcctgtgacag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86497511|gb|CI140144.1|CI140144
EST:     ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAG                         GATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
genomic: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgtta ... gtggtgacagGATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
EST: gi|157650165|gb|EX449799.1|EX449799
EST:     ACATCTGTTA-CCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAG                         GATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
genomic: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgtta ... gtggtgacagGATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
EST: gi|88691614|gb|CI733692.1|CI733692
EST:     ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAG                         GATCACTAGGAA
genomic: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgtta ... gtggtgacagGATCACTAGGAA
EST: gi|86594261|gb|CI251133.1|CI251133
EST:     ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAG                         GATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
genomic: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgtta ... gtggtgacagGATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
EST: gi|33803552|gb|CF327651.1|CF327651
EST:     ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAG                         GATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
genomic: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgtta ... gtggtgacagGATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
EST: gi|89173678|gb|CI041571.1|CI041571
EST:     ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAG                         GATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT
genomic: ACATCTGTTATCCATGAAATCACCAATGCTCTCGGGATTCATTGCTTCAGgtttgtgtta ... gtggtgacagGATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCT