1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TAAGCATCAAAATGCAAACTCTGTTCCGTTCGATGATAGTCGAACACCTTCCGATCAATCTTTATCCAATATTTTGTCTACGACAAGAGGGTACATCAAGgtattgtctgttgcatatctgatttgcggttttttttacactgcatttataggcattattgaaagaaaaatggaatcatatggattgcattgtccaagtg...
species | Oryza sativa |
transcript | LOC_Os01g56670.3 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CCGATCAATCTTTATCCAATATTTTGTCTACGACAAGAGGGTACATCAAG GGAAGTTTGTCCAGGATTAACTCATGCCCAGAAACTTGGCATATCATACTCEST: gi|29667977|gb|CB664252.1|CB664252
genomic: CCGATCAATCTTTATCCAATATTTTGTCTACGACAAGAGGGTACATCAAGgtattgtctg ... tttgggttagGGA-GTTTGTCCAGGATTAACTCATGCCCAGAAACTTGGCATATCATACTC
EST: CCGATCAATCTTTATCCAATATTTTGTCTACGACAAGAGGGTACATCAAG GGAGTTTGTCCAGGATTAACTCATGCCCAGAAACTTGGCATATCATACTCTEST: gi|29678674|gb|CB674949.1|CB674949
genomic: CCGATCAATCTTTATCCAATATTTTGTCTACGACAAGAGGGTACATCAAGgtattgtctg ... tttgggttagGGAGTTTGTCCAGGATTAACTCATGCCCAGAAACTTGGCATATCATACTCT
EST: CCAATATTTTGTCTACGACAAGAGGGTACATCAAG GGAGTTTGTCCAGGATTAACTCATGCCCAGAAACTTGGCATATCATACTCT
genomic: CCAATATTTTGTCTACGACAAGAGGGTACATCAAGgtattgtctg ... tttgggttagGGAGTTTGTCCAGGATTAACTCATGCCCAGAAACTTGGCATATCATACTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGCATCAAAATGCAAACTCTGTTCCGTTCGATGATAGTCGAACACCTTCCGATCAATCTTTATCCAATATTTTGTCTACGACAAGAGGGTACATCAAGgtattgtctgttgcatatctgatttgcggttttttttacactgcatttataggcattattgaaagaaaaatggaatcatatggattgcattgtccaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG