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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACAGTGCTTGTCTTATGGGATCTCATTGCTGCACTACAAGGGTTTAAGAAATCTGCACCTACCTTTCTTGAGACATTGATGCATAAATGGGTGTCAGgtttgttttcagatgatccacattgtgcttctatcgacatcccatcacattcaattcacaacatgtccaaagtcagctcgcggaagttgcacttgctgaatatcgtatgtaggaaagtaatgcttagtgatcaaccgcagtattctcctggtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g50690.1
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33681183|gb|CF309422.1|CF309422
EST:     GAAATCTGCACCTACCTTTCTTGAGACATTGATGCATAAATGGGTGTCAG                         AAAAAGGTAATGATGTAATGGCTGATTTGTGGAACAATCTTCTGGTAAGAA
genomic: GAAATCTGCACCTACCTTTCTTGAGACATTGATGCATAAATGGGTGTCAGgtttgttttc ... cctggtgcagAAAAAGGTAATGATGTAATGGCTGATTTGTGGAACAATCTTCTGGTAAGAA
EST: gi|218487231|gb|FG968030.1|FG968030
EST:     GAAATCTGCACCTACCTTTCTTGAGACATTGATGCATAAATGGGTGTCAG                         AAAAAGGTAATGATGTAATGGCTGATTTGTGGAACAATCTTCTGGTAAGAA
genomic: GAAATCTGCACCTACCTTTCTTGAGACATTGATGCATAAATGGGTGTCAGgtttgttttc ... cctggtgcagAAAAAGGTAATGATGTAATGGCTGATTTGTGGAACAATCTTCTGGTAAGAA