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ATTTCAACCTCAAAAGGGAAAATATCTTGCAGCTGCCTCAGAGAAGGCCATCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagcatttacccattcagaatgtgtataaggaagcattcacttagcccttgtaattaactgcattgctgtttatgcggcaccatgcctccgcca...
species | Oryza sativa |
transcript | LOC_Os01g42260.3 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAEST: gi|38478243|gb|CF962376.1|CF962376
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCA-Ggtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAA
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|33690021|gb|CF318260.1|CF318260
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|58682276|gb|CK070963.1|CK070963
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|218488081|gb|FG946110.1|FG946110
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCAACCTCAAAAGGGAAAATATCTTGCAGCTGCCTCAGAGAAGGCCATCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagcatttacccattcagaatgtgtataaggaagcattcacttagcccttgtaattaactgcattgctgtttatgcggcaccatgcctccgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG