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ATTTCAACCTCAAAAGGGAAAATATCTTGCAGCTGCCTCAGAGAAGGCCATCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagcatttacccattcagaatgtgtataaggaagcattcacttagcccttgtaattaactgcattgctgtttatgcggcaccatgcctccgcca...
species | Oryza sativa |
transcript | LOC_Os01g42260.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|16576984|gb|BI804280.1|BI804280
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACAC-AAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGAC-ATEST: gi|29681692|gb|CB677967.1|CB677967
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|4714252|gb|AU058219.1|AU058219
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAEST: gi|86430973|gb|CI083396.1|CI083396
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCA-Ggtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAA
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|86431296|gb|CI083719.1|CI083719
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCGACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|33690022|gb|CF318261.1|CF318261
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: ACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|58682276|gb|CK070963.1|CK070963
genomic: ACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|86260005|gb|CI065878.1|CI065878
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGGCAATEST: gi|33690021|gb|CF318260.1|CF318260
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|88842163|gb|CI081419.1|CI081419
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|8404601|gb|AU091955.1|AU091955
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTNTAGAAACCCTCTGCNG GGGCACACAAAGNATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|16575961|gb|BI803257.1|BI803257
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACAC-ACTTGCTTGTAGAAACCCTCTGCAG GGGCACAC-AAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGAC-ATEST: gi|29673281|gb|CB669556.1|CB669556
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|218488081|gb|FG946110.1|FG946110
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|29638960|gb|CB643969.1|CB643969
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAATEST: gi|38478243|gb|CF962376.1|CF962376
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
EST: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAG GGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
genomic: TCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagc ... tactctgtagGGGCACACAAAGAATATTCACTCACTTTGTTGGGATTCTACCGGTGACAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTCAACCTCAAAAGGGAAAATATCTTGCAGCTGCCTCAGAGAAGGCCATCTACATACTTGATGGAGAGACACAACTTGCTTGTAGAAACCCTCTGCAGgtctgttagcatttacccattcagaatgtgtataaggaagcattcacttagcccttgtaattaactgcattgctgtttatgcggcaccatgcctccgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG