1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
AAACATTTGACTGGCATCTATGATTTAATTGCTGTTTTGACGCACAAAGGGAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccagctactcatgcagttaattattggagtcaactgtttatttacgatctcactgatgattatgagctttttag
species | Oryza sativa |
transcript | LOC_Os01g36930.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|86873220|gb|CI328600.1|CI328600
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88484191|gb|CI421462.1|CI421462
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: ATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATNATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|89196124|gb|CI395542.1|CI395542
genomic: ATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: AGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|33803665|gb|CF327708.1|CF327708
genomic: AGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88901805|gb|CI374413.1|CI374413
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGG-AGEST: gi|86251819|gb|CI019011.1|CI019011
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCATGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88253087|gb|CI351713.1|CI351713
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88841750|gb|CI081006.1|CI081006
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACA GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|86895686|gb|CI315973.1|CI315973
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88842004|gb|CI081260.1|CI081260
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|11172378|gb|AU164255.1|AU164255
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|29615419|gb|CB620431.1|CB620431
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|22306033|gb|BQ907255.1|BQ907255
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88259760|gb|CI364053.1|CI364053
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: ATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|2798032|gb|AA751326.1|AA751326
genomic: ATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATEST: gi|58694158|gb|CK082845.1|CK082845
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCAT
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCATGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88264896|gb|CI367547.1|CI367547
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: TGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88835245|gb|CI370548.1|CI370548
genomic: TGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|29646292|gb|CB651299.1|CB651299
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88483824|gb|CI421095.1|CI421095
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88970083|gb|CI383585.1|CI383585
genomic: GGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: CCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|5002870|gb|AU067979.1|AU067979
genomic: CCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|8527359|gb|AU092174.1|AU092174
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: CATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|86870576|gb|CI320672.1|CI320672
genomic: CATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCT-GGTTAACCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACCCAAGGAGGAAGEST: gi|88515296|gb|CI442950.1|CI442950
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: CTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|29674106|gb|CB670381.1|CB670381
genomic: CTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88971857|gb|CI390449.1|CI390449
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|29679501|gb|CB675776.1|CB675776
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88455606|gb|CI521826.1|CI521826
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88959994|gb|CI381872.1|CI381872
genomic: GGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GGCTGGG-TAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88289462|gb|CI555824.1|CI555824
genomic: GGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|3766829|gb|AU030939.1|AU030939
genomic: GGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: AGAAGTGCAGACTCCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGGATTGAATTTGATGATGGACAACCCTAGCATACGCAAGGAGGAEST: gi|29667425|gb|CB663700.1|CB663700
genomic: AGAAGTGCAGACT-CAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAAT-GGATTGAATTTGATGAT-GACAACCCTAGCATACGCAAGGAGGA
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|86896861|gb|CI317365.1|CI317365
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGTCTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|86429804|gb|CI082227.1|CI082227
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|27920955|gb|CB096763.1|CB096763
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAGTTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|24208654|gb|AU225681.1|AU225681
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGGAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAAGGAGGAAEST: gi|88970237|gb|CI383739.1|CI383739
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGC-AAGGAGGAA
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88831197|gb|CI082007.1|CI082007
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|29615344|gb|CB620356.1|CB620356
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|86864564|gb|CI344162.1|CI344162
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|88846680|gb|CI373448.1|CI373448
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GCTGGGTTAAGCCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAGEST: gi|29689096|gb|CB685371.1|CB685371
genomic: GCTGGGTTAAG-CAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
EST: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACG GGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
genomic: GAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccag ... agctttttagGGAAATGGATTGAATTTGATGATGACAACCCTAGCATACGCAAGGAGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACATTTGACTGGCATCTATGATTTAATTGCTGTTTTGACGCACAAAGGGAGAAGTGCAGACTCAGGCCATTATGTTGGCTGGGTTAAGCAAGATGACGgtagggccagctactcatgcagttaattattggagtcaactgtttatttacgatctcactgatgattatgagctttttag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG