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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGGTTGGCTATCACGTACGGGCCTATGGGATAAGAGTCATCTGACGAGGCAAATTGAAAAgtgagtggttatggttttgcagtggtgaatattattttatgagcccaaattttatctgtgtaaatgcaattattttgtcctcggtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g14810.3
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g14810.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G044819_T02 (Zea mays), 5'ss of exon 14
ATGGGGTTGGCTATCACGTACGGGCCTATGGGATAAGAGTCATCTGACGAGGCAAATTGAAAAgtgagtggttatggttttgcagtggtgaatattatt-ttatgagcccaaattttatctgtgtaaatgcaatta-ttttgtcctcggtgcag
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ATGGGGTTGGTTGTCACGTGCTGGTCTATGGGATAAGAGTCATCTTACCAGGCAAATTGAAAAgtgagtcgctatattttttttatagtgaaaaaaaatgttatggacaccaaac---------tgaatgcaactaattttgcatttcctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58675467|gb|CK064154.1|CK064154
EST:     TCACGTACGGGCCTATGGGATAAGAGTCATCTGACGAGGCAAATTGAAAA                         ATATGCTGATATATACACATCAAGGGTTTCAAATTTTCTACATTATACTCC
genomic: TCACGTACGGGCCTATGGGATAAGAGTCATCTGACGAGGCAAATTGAAAAgtgagtggtt ... ctcggtgcagATATGCTGATATATACACATCAAGGGTTTCAAATTTTCTACATTATACTCC