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GAGATTTCAACCACGTCATGGGGGATATCTTGCAGTAGCTTCGGAGAATGCTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAGgtttgtagagactttctaccttgcagttggcacgtgcattctgatcttctaaattcactgaggttccagtaacatatataccgaccaacaaatctatgtg...
species | Oryza sativa |
transcript | LOC_Os01g08190.2 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAG GGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATATEST: gi|25804243|gb|CA760204.1|CA760204
genomic: CTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAGgtttgtagag ... ggaactgcagGGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATAT
EST: CTTGCCTTAGGAGATNTGAG GGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATATEST: gi|86482202|gb|CI124835.1|CI124835
genomic: CTTGCCTTAGGAGATTTGAGgtttgtagag ... ggaactgcagGGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATAT
EST: ACTCAAGCTTGCCTTAGGAGATTTGAG GGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATATEST: gi|86478759|gb|CI121392.1|CI121392
genomic: ACTCAAGCTTGCCTTAGGAGATTTGAGgtttgtagag ... ggaactgcagGGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATAT
EST: CTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAG GGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATATEST: gi|66913391|gb|CX100239.1|CX100239
genomic: CTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAGgtttgtagag ... ggaactgcagGGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATAT
EST: CTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAG GGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATATEST: gi|58680898|gb|CK069585.1|CK069585
genomic: CTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAGgtttgtagag ... ggaactgcagGGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATAT
EST: GTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAG GGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATAT
genomic: CTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAGgtttgtagag ... ggaactgcagGGCCACACAAAGCATGTCGATTCAGTATGCTGGGATCCCAGTGGCGAATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATTTCAACCACGTCATGGGGGATATCTTGCAGTAGCTTCGGAGAATGCTGTCTCTATACTTGATGTGGAGACTCAAGCTTGCCTTAGGAGATTTGAGgtttgtagagactttctaccttgcagttggcacgtgcattctgatcttctaaattcactgaggttccagtaacatatataccgaccaacaaatctatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT