1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
CAATAGCTCCTTCTCGACTTGGACCCCAGATCGGAATGAAGCACCCTCCAGCCTCTCCTGAGGCGCTTACACTTGCTAGCTGGATTGGTAGGAGCTATAGgtaagtaaaatacttatttttagcaaaagtctatctcaggttcttcatcatcagaaccacctacacattgccacatctgaagttgtgatcaatgatgttaatgcactagttatttccgtggatctttcag
species | Oryza sativa |
transcript | LOC_Os12g41860.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TACACTTGCTAGCTGGATTGGTAGGAGCTATAG GGCTCACACCGGAGCAGATATCCGTTGGTCTGATACCGAAGATGCCGATTCEST: gi|58683487|gb|CK072174.1|CK072174
genomic: TACACTTGCTAGCTGGATTGGTAGGAGCTATAGgtaagtaaaa ... gatctttcagGGCTCACACCGGAGCAGATATCCGTTGGTCTGATACCGAAGATGCCGATTC
EST: GCCTCTCCTGAGGCGCTTACACTTGCTAGCTGGATTGGTAGGAGCTATAG GGCTCACACCGGAGCAGATATCCGTTGGTCTGATAACGAAGATGCCGATTCEST: gi|66924702|gb|CX111550.1|CX111550
genomic: GCCTCTCCTGAGGCGCTTACACTTGCTAGCTGGATTGGTAGGAGCTATAGgtaagtaaaa ... gatctttcagGGCTCACACCGGAGCAGATATCCGTTGGTCTGATACCGAAGATGCCGATTC
EST: GCCTCTCCTGAGGCGCTTACACTTGCTAGCTGGATTGGTAGGAGCTATAG GGCTCACACCGGAGCAGATATCCGTTGGTCTGATACCGAAGATGCCGATTC
genomic: GCCTCTCCTGAGGCGCTTACACTTGCTAGCTGGATTGGTAGGAGCTATAGgtaagtaaaa ... gatctttcagGGCTCACACCGGAGCAGATATCCGTTGGTCTGATACCGAAGATGCCGATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATAGCTCCTTCTCGACTTGGACCCCAGATCGGAATGAAGCACCCTCCAGCCTCTCCTGAGGCGCTTACACTTGCTAGCTGGATTGGTAGGAGCTATAGgtaagtaaaatacttatttttagcaaaagtctatctcaggttcttcatcatcagaaccacctacacattgccacatctgaagttgtgatcaatgatgttaatgcactagttatttccgtggatctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT