1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CAGAAGGCTGGCACCCTCATCTGAAAGACTTGTGTATGCACTGGTTCACCAGATTTTCCATGGGATCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAGgtctccctgcagtaaatcctgcactccttaacgagtatatgaagtttattgtttatatcttgttttgctcatcaaaattgcag
species | Oryza sativa |
transcript | LOC_Os12g07880.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAG TTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTAEST: gi|88283314|gb|CI404760.1|CI404760
genomic: TCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAGgtctccctgc ... aaaattgcagTTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTA
EST: CATGGGATCAAAGAGCATTTTCTTGTCACCACAGAGGCTTAAG TTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTEST: gi|86834266|gb|CI344026.1|CI344026
genomic: CATGGGATCAAAGAGCATTTTCTTGTCACCACAGA-GCTTAAGgtctccctgc ... aaaattgcagTTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCT
EST: AGATTTTCCATGGGATCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAG TTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTAEST: gi|29629953|gb|CB634962.1|CB634962
genomic: AGATTTTCCATGGGATCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAGgtctccctgc ... aaaattgcagTTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTA
EST: AGATTTTCCATGGGATCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAG TTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAGTTACCGGCGCTTCTAEST: gi|88511000|gb|CI438506.1|CI438506
genomic: AGATTTTCCATGGGATCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAGgtctccctgc ... aaaattgcagTTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTA
EST: TTTCTTGTCACCACAGAGCTTAAG TTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTAEST: gi|33798114|gb|CF324917.1|CF324917
genomic: TTTCTTGTCACCACAGAGCTTAAGgtctccctgc ... aaaattgcagTTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTA
EST: AGATTTTCCATGGGATCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAG TTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTAEST: gi|89185796|gb|CI047665.1|CI047665
genomic: AGATTTTCCATGGGATCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAGgtctccctgc ... aaaattgcagTTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTA
EST: AGATTTTCCATGGGATCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAG TTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTAEST: gi|89173643|gb|CI041536.1|CI041536
genomic: AGATTTTCCATGGGATCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAGgtctccctgc ... aaaattgcagTTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTA
EST: AGATTTTCCATGGGATCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAG TTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTA
genomic: AGATTTTCCATGGGATCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAGgtctccctgc ... aaaattgcagTTCAATTGCTTTCTCCTCATGCCGATTGTTGACAAATTACCGGCGCTTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAAGGCTGGCACCCTCATCTGAAAGACTTGTGTATGCACTGGTTCACCAGATTTTCCATGGGATCAAAGAGCATTTTCTTGTCACCACAGAGCTTAAGgtctccctgcagtaaatcctgcactccttaacgagtatatgaagtttattgtttatatcttgttttgctcatcaaaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT