1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
AGGAAAAGAAGAAGATTCATTGGAAAAACACAATAGAGGAGTAACAGATGGAGATTCTGAAGTGATTATGAACCTCCGAAGTGGGCTAACATCACTACAGgtaccatttcaggagaagttttgtaagttttatgtgttatacctatgaggcacattttaaaatgcattttatttttttactgcag
species | Oryza sativa |
transcript | LOC_Os10g42439.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GAGATTCTGAAGTGATTATGAACCTCCGAAGTGGGCTAACATCACTACAG AATCTTCTAACCAGTAATCCAGGATTGGCTGCTGTTTTTGCTTCCAAGGAAEST: gi|29630472|gb|CB635481.1|CB635481
genomic: GAGATTCTGAAGTGATTATGAACCTCCGAAGTGGGCTAACATCACTACAGgtaccatttc ... tttactgcagAATCTTCTAACCAGTAATCCAGGATTGGCTGCTGTTTTTGCTTCCAAGGAA
EST: GAGATTCTGAAGTGATTATGAACCTCCGAAGTGGGCTAACATCACTACAG AATCTTCTAACCAGTAATCCAGGATTGGCTGCTGTTTTTGCTTCCAAGGAAEST: gi|86885712|gb|CI309839.1|CI309839
genomic: GAGATTCTGAAGTGATTATGAACCTCCGAAGTGGGCTAACATCACTACAGgtaccatttc ... tttactgcagAATCTTCTAACCAGTAATCCAGGATTGGCTGCTGTTTTTGCTTCCAAGGAA
EST: GAGATTCTGAAGTGATTATGAACCTCCGAAGTGGGCTAACATCACTACAG AATCTTCTAACCAGTAATCCAGGATTGGCTGCTGTTTTTGCTTCCAAGGAAEST: gi|88407243|gb|CI583701.1|CI583701
genomic: GAGATTCTGAAGTGATTATGAACCTCCGAAGTGGGCTAACATCACTACAGgtaccatttc ... tttactgcagAATCTTCTAACCAGTAATCCAGGATTGGCTGCTGTTTTTGCTTCCAAGGAA
EST: AGATTCTGAAGTGATTATGAAC-TGCCGAAGTGGGCTAACATCACTACAG AATCTTCTAACCAGTAATCCAGGATTGGCTGCTGTTTTTGCTTCCAAGGAAEST: gi|29630907|gb|CB635916.1|CB635916
genomic: AGATTCTGAAGTGATTATGAACCT-CCGAAGTGGGCTAACATCACTACAGgtaccatttc ... tttactgcagAATCTTCTAACCAGTAATCCAGGATTGGCTGCTGTTTTTGCTTCCAAGGAA
EST: GAGATTCTGAAGTGATTATGAACCTCCGAAGTGGGCTAACATCACTACAG AATCTTCTAACCAGTAATCCAGGATTGGCTGCTGTTTTTGCTTCCAAGGAA
genomic: GAGATTCTGAAGTGATTATGAACCTCCGAAGTGGGCTAACATCACTACAGgtaccatttc ... tttactgcagAATCTTCTAACCAGTAATCCAGGATTGGCTGCTGTTTTTGCTTCCAAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAAAAGAAGAAGATTCATTGGAAAAACACAATAGAGGAGTAACAGATGGAGATTCTGAAGTGATTATGAACCTCCGAAGTGGGCTAACATCACTACAGgtaccatttcaggagaagttttgtaagttttatgtgttatacctatgaggcacattttaaaatgcattttatttttttactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG