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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagggataataacttctcatttcctgttttgctgatttcttctctgggagcaaaacctgatgacaacttattttgcag

Basic information

species Oryza sativa
transcript LOC_Os10g32550.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G111477_T01 (Zea mays), 5'ss of exon 3
AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagggataataacttctcatttcctgttttgctgatttcttctctgggagcaaaacctgatgacaacttattttgcag
 |||||||| ||||| |||||||| |||||||| |||||||||| ||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||||  ||  |    || ||  |   || || | |   |     | | | | ||  | |  ||| ||   | |  || | | ||||
TGGTGTTGCTCTTCTCTATGCATCGAAGGAGCTTGATAAATTGCAGACAGCGAACTTCGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtccggtgg---caagaaagttggatgtcttttcaggactcgtacatgtttgctaacctaacatg-caatattttgtat-gcag

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G416120_T01 (Zea mays), 5'ss of exon 14
AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagggataataacttctcatttcctgttttgctgatttcttctctgggagcaaaacc--tgatgacaacttattttgcag
 |||||||| ||||| |||||||| |||||||| ||||| |||| ||| || || |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||    || ||  |   ||||    ||   |    ||| |   || | || || |    |  ||  | ||  | |||||
TGGTGTTGCTCTTCTCTATGCATCGAAGGAGCTCGATAAGTTGCAGACAGCAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtctgggag----aagaatgttggatttt---ttcccccagattcatacttgtgtgctaagctggcgtggaatattttgtatgcag

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GLYMA20G33910.1 (Glycine max), 5'ss of exon 15
AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagggataataact---tctcatttcctgttttgc-tgatttcttctctgg--gagcaaaacctgat-gacaacttattttgcag--------------------------------------------------------------------------------------------------------
 |||||||| |||||||||||||| |  ||| |||||||  | |  ||||| ||||||||||||||||| ||||| || ||||| || ||||||||||||||| | |        |  ||   | ||||||    | || | |    |  | |||||  | |||  ||   |  || |  || | |  |                                                                                                          
TGGTGTTGCTCTTCTTTATGCATCGAGTGAGTTGGATAAGCTTCAAACTGCCAACTTTGATCAAAAGATAGGTGTCCAGATCATCCAAAATGCTTTGAAGgttagtgtttttcttttgctgattttcattttagatcttccatagcattgtttctggtagggcactactccacagatagtttctgtctcctcccttattcacttcaggcctcattctgcaatattttgagctttacttgcctctaagatgtatggtttaaccaacccttactacctgttctgacaaaaaatgcag

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GLYMA10G25630.1 (Glycine max), 5'ss of exon 15
AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagggat-aataacttctcatttcctgttttgctgatttcttctctgggagcaaaacctgatgaca--acttattttgcag---------------------
 |||||||| ||||| ||||| ||||| ||| |||||||| | |  ||||||||||||||||| ||||||||||| || || || || |||||||| |||||| |       | |||   |||| ||||||| ||| ||     || |||     | |  |   |||| |||  ||  || |||  |                     
TGGTGTTGCTCTTCTATATGCGTCAAAAGAGTTGGATAAACTTCAAACTGCTAACTTTGATCAGAAGATTGGTGTCCAGATTATCCAAAATGCTTTAAAGgttagttttctctgaattttttctgatttcctctttagc-----tcctct---aaatcgcattttgattacattacggatcttgtggaaggaaaaccagcaccagatt

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GLYMA10G33680.1 (Glycine max), 5'ss of exon 15
AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagggataataact---tctcatttcctgttttgc-tgatttcttctctgggag--caaaacctgatgacaacttattttgcag----------
 |||||||| ||||| ||||||||||  ||| |||||||  | |  ||||||||||||||||||||||| || || || ||||| || ||||||||||||||| | |        |  ||   | ||||||    || | | |    |  | ||||| ||  ||  ||   |       || | |  |            
TGGTGTTGCTCTTCTCTATGCATCAAGTGAGTTGGATAAGCTTCAAACTGCTAACTTTGATCAAAAGATAGGGGTCCAGATCATCCAAAATGCTTTGAAGgttagtgtttttcttttgctgattttcattttagattatccatagcattgtttctggtaggtcactactccacagatttttctctctctcatcccttatt

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GLYMA20G19980.1 (Glycine max), 5'ss of exon 15
AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagggat-aataacttctcatttcctgttttgctgatttcttctctgggagcaaaacctgatgacaacttattttgcag-----------------
 |||||||| ||||| |||||||| |  ||| |||||||| | |  ||||||||||| | ||||||||||||||| || || || || |||||||| |||||  |       | |||   |||| ||||||| ||| |||  |   |  |         |  | |    ||    ||| |||  |                 
TGGTGTTGCTCTTCTATATGCATCGAGAGAGTTGGATAAACTTCAAACTGCTAACTTCGGTCAAAAGATTGGTGTCCAGATTATCCAAAATGCTTTAAAGgtcagttttctctgaattttttctgatttcctctttagctcctccatattgcattttttatgcttac--actttgtatcttgtggaaggaaaaccagcacca

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 15
lower sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 14
AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagggataataacttctcatttcctgttttgctgatttcttctctgggagcaaaacctgatgacaacttattttgcag
 |||||||| ||| | ||||| || || || || || ||  |  | || |||||||||||||| || |||||||| ||||||||||| || ||  | ||||| |       || | |  |  ||||   |  |       |   |||||  |      | ||   |   |    | |  |||||
TGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACTCAAGgtgtttctctcatcaca-ttgttcatcctcgctagcataaacagcttcta-gaatcttacacacaaaatctttctttgatgcag

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 15
lower sequence: Vv05s0051g00340.t01 (Vitis vinifera), 5'ss of exon 15
AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagggataataacttctcatttcctgttttgctga--tttcttctctgggagcaaaacctgatgacaacttattttgcag-----------------------
 || || |||||||||||||| || || ||| |||| ||| |||| ||  | ||||||||||| ||||||||||| || || || ||||||||| |||| ||| |       || | | |  |  | |  | |||    ||  || ||   || |||  |    |||   | || |  | | | |                        
TGGCGTGGCACTTCTTTATGCTTCCAAAGAGTTGGACAAACTGCCAACATCAAACTTTGATCAGAAGATTGGTGTTCAGATTATCCAGAATGCTCTGAAAgttag-------tattcattcattttctaatatttaaaagacattcctcagcttggattag--tctgtaaataattcttgtggaatcacacaagagtcattcaggatag

upper sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 15
lower sequence: PP1S52_245V6.1 (Physcomitrella patens), 5'ss of exon 15
AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgt-----ttgggagggataataacttctcatttcctgttttgctgatttcttctctgggagcaaaacctgatgacaacttattttgcag-------------------------------------------------------------------
 |||||||| ||  | ||||| ||   |||||| |||||  | |  || || ||||||||||| ||| |||| || |||||||| |||||||| ||||||||     ||| |     | ||      | | ||  |    ||      |||     ||    |  |   | |     |||  |  |||                                                                    
TGGTGTTGCTCTATTGTATGCTTCCCGGGAGCTTGATAAGATTCAAACCGCGAACTTTGATCAGAAGGTTGGAGTGCAAATCATCCAGAATGCCTTGAAGgtactttttgtgcaacttgatctggagtgagtttgtaaaatgaacgaatctgtatcggacttaggagaggctattgtcttgatc-gcatcagcttatgtgtcctctttactgggagtaaaatttcggtgaaatgtaatgagcatgttgtactgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89189436|gb|CI048975.1|CI048975
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|88989058|gb|CI042171.1|CI042171
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|287010|gb|D15815.1|D15815
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|33795638|gb|CF323689.1|CF323689
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCA
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCA
EST: gi|89186127|gb|CI047996.1|CI047996
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|88907186|gb|CI089980.1|CI089980
EST:     ATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: ATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|86495221|gb|CI137854.1|CI137854
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|88328307|gb|CI651318.1|CI651318
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|29632104|gb|CB637113.1|CB637113
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|218483700|gb|FG965930.1|FG965930
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|27577977|gb|CB000672.1|CB000672
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|86431980|gb|CI085591.1|CI085591
EST:     ATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: ATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|89180903|gb|CI044986.1|CI044986
EST:     CATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|27576373|gb|CA999067.1|CA999067
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACGATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|88833590|gb|CI077071.1|CI077071
EST:     GTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: GTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|94362407|gb|CI052402.1|CI052402
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|27546502|gb|CA764746.2|CA764746
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|88907448|gb|CI090242.1|CI090242
EST:     GTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: GTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|86859495|gb|CI278890.1|CI278890
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|87029223|gb|CI276491.1|CI276491
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|88248193|gb|CI248042.1|CI248042
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|58686259|gb|CK074946.1|CK074946
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|163927982|gb|EG712958.1|EG712958
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|86503371|gb|CI146004.1|CI146004
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGACTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|163928905|gb|EG709758.1|EG709758
EST:     CAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|88249312|gb|CI249161.1|CI249161
EST:     TTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: TTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|218497090|gb|FG953989.1|FG953989
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCCGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|89177209|gb|CI043712.1|CI043712
EST:     TTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: TTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|218501741|gb|FG957158.1|FG957158
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|88907326|gb|CI090120.1|CI090120
EST:     CTAACTGTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|58678370|gb|CK067057.1|CK067057
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|25803762|gb|CA759723.1|CA759723
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|58666161|gb|CK054847.1|CK054847
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|89189803|gb|CI049342.1|CI049342
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|89173683|gb|CI041576.1|CI041576
EST:     ATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: ATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|86493424|gb|CI136057.1|CI136057
EST:     CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATGGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: CTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|58594648|gb|CF992956.1|CF992956
EST:     ATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGGGGTG
genomic: ATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
EST: gi|86428036|gb|CI073133.1|CI073133
EST:     TCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAG                         ACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT
genomic: TCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 69 (upstream exon), 74 (downstream exon)
Score: 107

AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagg ... tattttgcagACACCGGTGCACACTATTGCTTCCAACGCAGGTGTAGAAGGGGCTGTTGTTGTCGGTAAGCTTTTGGAACAAGATAACACCGACCTTGGCTATGATGCGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagggataataacttctcatttcctgttttgctgatttcttctctgggagcaaaacctgatgacaacttattttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG