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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGATGCGTTGGACCGGATGGTCGACCCAGCGCTCAAGGGCCTGTACCCTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataaccttcactcctggtacaatgcagtttgccagcatattcataactgaacaccaaggatctgaattataccaaccaaaaccttcactatttcag

Basic information

species Oryza sativa
transcript LOC_Os10g25090.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g25090.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G004572_T01 (Zea mays), 5'ss of exon 15
CATCGATGCGTTGGACCGGATGGTCGACCCAGCGCTCAAGGGCCTGTACCCTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataaccttcactcctggtacaatgcagtttgccagcatattcataactgaacaccaaggatctgaattataccaaccaaaaccttcactatttcag--
||| || || ||||||| |||||| || || ||||||||||| || ||||| ||||||||||| |||||||| || || || ||||| ||||||||||||||||  |  ||     ||   ||||| |||||| |    ||| |  | | |  || ||||   |    |   |  | | | || |  ||  |    |||   
CATTGACGCCTTGGACCAGATGGTTGATCCGGCGCTCAAGGGTCTTTACCCCGCCAAATCCCTTTCCCGTTTTGCGGATGTTATTGCTCTGTGTGTCCAGgtatgaactctagcgcccacatacaacgcagttagtatacatctatacatcaaaataccagccagt--agcgaagctagcaaataatttatcggggtcatca

upper sequence: LOC_Os10g25090.1 (Oryza sativa), 5'ss of exon 15
lower sequence: PP1S284_52V6.1 (Physcomitrella patens), 5'ss of exon 16
CATCGATGCGTTGGACCGGATGGTCGACCCAGCGCTCAAGGGCCTGTACCCTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc----ttcac--------tcctggtacaat-gcagtttgccagcatattcataactgaacaccaaggatctgaattataccaaccaaaaccttcactatttcag---------------------------------------------------
|||||| ||  | |   ||||||| || |||||  | |||||| |||| ||||||||||| || ||||||||||| |||||  ||||||| |||||||||||||   ||     ||| |        || ||| | | |  | | | | ||  ||||||   | || | | | ||| |     |  ||  ||  || || ||  ||   |                                                      
CATCGACGCTCTAGCAAGGATGGTGGATCCAGCATTGAAGGGCATGTATCCTGCCAAATCTCTCTCCCGTTTCGCTGACGTTGTTGCGCTTTGTGTCCAGgtatgctactcgtgttctcaatcaatttcttggcatattcactgataggcattatattc--gagtggaaaaccaggtttcagctctta--aagaaagactttttcttcctggatctttagagcagactcgaaattacgtaacttgcttcattcctgttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86842917|gb|CI342166.1|CI342166
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88551028|gb|CI481048.1|CI481048
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88835728|gb|CI370833.1|CI370833
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|2317519|gb|C22573.1|C22573
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88558320|gb|CI488798.1|CI488798
EST:     CTGCCAAATCCCTTTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|2317518|gb|C22572.1|C22572
EST:     GCCAAATCCCTGGTCCCGTTTCGCAGACGTCATTGGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: -CCAAATCCCTG-TCCCGTTTCGCAGACGTCATTG-CGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86507940|gb|CI150573.1|CI150573
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88522065|gb|CI449798.1|CI449798
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86859741|gb|CI345403.1|CI345403
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86851183|gb|CI312584.1|CI312584
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86427833|gb|CI072930.1|CI072930
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88549279|gb|CI479155.1|CI479155
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86887376|gb|CI313279.1|CI313279
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88978580|gb|CI384925.1|CI384925
EST:     TGCCAAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTCCAAGCGCTGGTC
genomic: TGCC-AAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88252526|gb|CI350954.1|CI350954
EST:     CTGCCAAATCCCTGTCCCCTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCACTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86253208|gb|CI058133.1|CI058133
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86836264|gb|CI346245.1|CI346245
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88554263|gb|CI484430.1|CI484430
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88270600|gb|CI385858.1|CI385858
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTTCCCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTCCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|89191033|gb|CI392886.1|CI392886
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86598931|gb|CI355548.1|CI355548
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88226798|gb|CI224783.1|CI224783
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88534105|gb|CI462799.1|CI462799
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88439313|gb|CI536285.1|CI536285
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86852287|gb|CI319222.1|CI319222
EST:     CTGCCAAATCCCTGTCCCGTTTGGCAGACTTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88534580|gb|CI463314.1|CI463314
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88850243|gb|CI091736.1|CI091736
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88257127|gb|CI359515.1|CI359515
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86841816|gb|CI337466.1|CI337466
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88549036|gb|CI478886.1|CI478886
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|87004671|gb|CI300993.1|CI300993
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86545195|gb|CI185401.1|CI185401
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88541568|gb|CI470845.1|CI470845
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88265894|gb|CI376796.1|CI376796
EST:     CTGCCAAATCCCTGTCCCGTTTCGCACACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88836021|gb|CI371126.1|CI371126
EST:     CTGCCAAATCCCTGTCCCCTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88255244|gb|CI354068.1|CI354068
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86903063|gb|CI324533.1|CI324533
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86885256|gb|CI317016.1|CI317016
EST:     GCAGACGTCATTGCGCTGTGTTTCCAG                         CCTGAGCCGGATTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCT-GTC
genomic: GCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86497623|gb|CI140256.1|CI140256
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88375583|gb|CI525677.1|CI525677
EST:     CCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|2317454|gb|C22508.1|C22508
EST:     TGCCAAATCCCTGTCCCGTTTNCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: TGCCAAATCCCTGTCCCGTTT-CGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88538136|gb|CI467139.1|CI467139
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88838032|gb|CI372600.1|CI372600
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCCCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88837821|gb|CI079181.1|CI079181
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88996983|gb|CI389649.1|CI389649
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86415385|gb|CI069788.1|CI069788
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86837636|gb|CI345814.1|CI345814
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88544348|gb|CI473046.1|CI473046
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86843430|gb|CI341482.1|CI341482
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88549675|gb|CI479582.1|CI479582
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86833373|gb|CI334967.1|CI334967
EST:     CTGCCAAATCCCTGTCCCGTTTCCCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCCCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88553858|gb|CI483997.1|CI483997
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|89191054|gb|CI392907.1|CI392907
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTTTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCCCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86885335|gb|CI317095.1|CI317095
EST:     TCCCAAATCCCTGTCCCGTTTCCCAGACGTCATTGCCCTGTAGTGTCCAG                         CCTGAGCCGGAGTTCAGACCCCCGATGTCTGAGGTGGTGCAAGCGCTGGT
genomic: TGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGT-GTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGT
EST: gi|86882948|gb|CI314219.1|CI314219
EST:     CTACCAAATCCCTGTCCCGTTTCGCATACGTCATTGCGCTGTGTTTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86842470|gb|CI335339.1|CI335339
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88381134|gb|CI525904.1|CI525904
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCTCTGTGTTTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88261961|gb|CI365537.1|CI365537
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88534128|gb|CI462824.1|CI462824
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88203910|gb|CI203759.1|CI203759
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGGGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86412966|gb|CI067371.1|CI067371
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88832864|gb|CI369754.1|CI369754
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88978536|gb|CI384909.1|CI384909
EST:     CTGCCAAATCCCTGTCCCATTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGT-GTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88226800|gb|CI224785.1|CI224785
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|86870434|gb|CI320530.1|CI320530
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTTTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88261486|gb|CI365062.1|CI365062
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88545504|gb|CI475069.1|CI475069
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|89181312|gb|CI112818.1|CI112818
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88535716|gb|CI465417.1|CI465417
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88559901|gb|CI490517.1|CI490517
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|88969733|gb|CI383236.1|CI383236
EST:     CTGCCAAATCCCTGTCCCCTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
EST: gi|87028904|gb|CI351207.1|CI351207
EST:     CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAG                         CCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC
genomic: CTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 68 (upstream exon), 72 (downstream exon)
Score: 25

CATCGATGCGTTGGACCGGATGGTCGACCCAGCGCTCAAGGGCCTGTACCCTGCCAAATCCCTGTCCCGTTTCGCAGACGTCATTGCGCTGTGTGTCCAGgtatataacc ... actatttcagCCTGAGCCGGAGTTCAGACCGCCGATGTCTGAGGTGGTGCAAGCGCTGGTCCGCCTTGTTCAGAGGGCCAACATGACTAGGAGAATGATCGACGGCGAAG




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