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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCAAGGAGAGCATGGATGGAAGCCACGGAACTACACTGGACTATGTGATAAGATTCTTGCTAAAAGTCAAACTGTGgtatgtgtgatgtaggcattagaccaacctgaacccttttcgttggcatgaagagcacttatttaatatccatttaataatttgatcagtaaacaatgat...

Basic information

species Oryza sativa
transcript LOC_Os09g28570.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g28570.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G479068_T01 (Zea mays), 5'ss of exon 3
TATCAAGGAGAGCATGGATGGAAGCCACGGAACTACACTGGACTATGTGATAAGATTCTTGCTAAAAGTCAAACTGTGgtatgt--gtgatgta-ggcattagaccaacctgaacccttttcgttggcatgaag--agcacttatttaatatccat-----ttaataatttgatcagta-aacaatgat----------------------------------------------------------------------------------
||||||||||||   ||||||||||||| ||| ||||||||| |||| || ||||||||||  |||||||| ||||||||||||  ||| || |   ||  | | | |   | || |||||     |   | ||  | |||  | | ||| |  |       |  |   || |  |  | ||| |  |                                                                                   
TATCAAGGAGAGGGAGGATGGAAGCCACAGAATTACACTGGATTATGCGAGAAGATTCTTGGGAAAAGTCAGACTGTGgtatgttcgtgctgaataacaccaaatctaaaaggacgcttttacacagatcgtagttatcacacactgaatctaaaaggacgcttctcgcttaactaccacaaccagaactagaaaaagaagtgcttttaaaagagccactgcaaggacaaatgaagcctaaaattatgagatatcatctttctaatttcag

upper sequence: LOC_Os09g28570.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G147191_T02 (Zea mays), 5'ss of exon 15
TATCAAGGAGAGCATGGATGGAAGCCACGGAACTACACTGGACTATGTGATAAGATTCTTGCTAAAAGTCAAACTGTGgtatgtgtgatgtaggcattagaccaacctgaacccttttcgttggcatgaagagcact--tatttaatatccatttaataatttgatcagtaaacaatg-at----------------
|||||||||||| |||| |||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| | |             ||||| |      | || ||| | ||| |  |   |  |||||   || |||| || || ||| | || | |||||| ||                
TATCAAGGAGAGGATGGCTGGAAGCCAAAGAACTACACTGGACTATGTGAGAAGATTCTAGCTAAAAGTCAAACTGTGgtatgtctca-------------ccaactt------tgtttgttagaatgtactgtgatgatatttggcattcattaaacaaattggttaggagacaatgcatgtagtgtatttgatcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|3766964|gb|AU031074.1|AU031074
EST:     GGAACTACACTGGACTATGTGATAAGATTCTTGCTAAAAGTCAAACTGTG                         GCTGGTTTTTTCCTAATCCAGTATGGCTCACTTGTGGCAAGATCATCTTGG
genomic: GGAACTACACTGGACTATGTGATAAGATTCTTGCTAAAAGTCAAACTGTGgtatgtgtga ... tcaacttcagGCTGGTTTTTTCCTAATCCAGTATG-CTCACTTGTGGCAAGATCATCTTG-
EST: gi|88969673|gb|CI383176.1|CI383176
EST:     TAAGATTCTTGCTAAAAGTCAAACTGTG                         GCTGGTTTTTTCCTAATCCAGTATGCTCACTTGTGCCAAGATCATCTTGAC
genomic: TAAGATTCTTGCTAAAAGTCAAACTGTGgtatgtgtga ... tcaacttcagGCTGGTTTTTTCCTAATCCAGTATGCTCACTTGTGGCAAGATCATCTTGAC