1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
ACTTGATAAGTACCTGCACAGTAATGATATTCATGTTGTTGCTGGGGCTTTGCTAGGTATTGGAATTGTTTCTTGTGGTGTGAAGAGTGACTGCGATCCGgtatgtccatattctaaaacttctaatgcgcaagtctctgtacatcttctaaaacttctaatgcgcaagactctgtactgatgttgtgacatcttttccag
species | Oryza sativa |
transcript | LOC_Os09g15750.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TGGTGTGAAGAGTGACTGCGATCCG GCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGAEST: gi|58605861|gb|CK033894.1|CK033894
genomic: TGGTGTGAAGAGTGACTGCGATCCGgtatgtccat ... tcttttccagGCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGA
EST: TGCTAGGTATTGGAATTGTTTCTTGTGGTGTGAAGAGTGACTGCGATCCG GCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGAEST: gi|88333926|gb|CI645340.1|CI645340
genomic: TGCTAGGTATTGGAATTGTTTCTTGTGGTGTGAAGAGTGACTGCGATCCGgtatgtccat ... tcttttccagGCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGA
EST: TGGTGTGAAGAGTGACTGCGATCCG GCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGAEST: gi|88353739|gb|CI634530.1|CI634530
genomic: TGGTGTGAAGAGTGACTGCGATCCGgtatgtccat ... tcttttccagGCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGA
EST: TGGTGTGAAGAGTGACTGCGATCCG GCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGAEST: gi|88342006|gb|CI644343.1|CI644343
genomic: TGGTGTGAAGAGTGACTGCGATCCGgtatgtccat ... tcttttccagGCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGA
EST: TGGTGTGAAGAGTGACTGCGATCCG GCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGAEST: gi|88340773|gb|CI636933.1|CI636933
genomic: TGGTGTGAAGAGTGACTGCGATCCGgtatgtccat ... tcttttccagGCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGA
EST: TGGTGTGAAGAGTGACTGCGATCCG GCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGAEST: gi|29682161|gb|CB678436.1|CB678436
genomic: TGGTGTGAAGAGTGACTGCGATCCGgtatgtccat ... tcttttccagGCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGA
EST: TGCTAGGTATTGGAATTGTTTCTTGTGGTGTGAAGAGTGACTGCGATCCG GCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGA
genomic: TGCTAGGTATTGGAATTGTTTCTTGTGGTGTGAAGAGTGACTGCGATCCGgtatgtccat ... tcttttccagGCATTTGCTCTTATTTCTGAGTATTTCAGCAGGGATGAGTCAATTATACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTGATAAGTACCTGCACAGTAATGATATTCATGTTGTTGCTGGGGCTTTGCTAGGTATTGGAATTGTTTCTTGTGGTGTGAAGAGTGACTGCGATCCGgtatgtccatattctaaaacttctaatgcgcaagtctctgtacatcttctaaaacttctaatgcgcaagactctgtactgatgttgtgacatcttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA