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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttcatactctggtgtaaaaagtaggagctgctattgctattttggtaattacggagtagttattttttgtttagaagttagtcaagttactat...

Basic information

species Oryza sativa
transcript LOC_Os08g43060.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22307949|gb|BQ909171.1|BQ909171
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCCATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86517289|gb|CI157495.1|CI157495
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGCCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86477539|gb|CI120172.1|CI120172
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGCTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86478390|gb|CI121023.1|CI121023
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|8334619|gb|BE039603.1|BE039603
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88234335|gb|CI234184.1|CI234184
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|29638767|gb|CB643776.1|CB643776
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88229136|gb|CI229012.1|CI229012
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88838154|gb|CI372722.1|CI372722
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|33810854|gb|CF331318.1|CF331318
EST:     ACGGGNGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: ACGGG-GCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88236313|gb|CI235515.1|CI235515
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88966352|gb|CI119487.1|CI119487
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88253718|gb|CI352344.1|CI352344
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCACTTGGTTTGAAGGGCAGTGACCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|87017915|gb|CI273937.1|CI273937
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88966258|gb|CI119393.1|CI119393
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|89180178|gb|CI044457.1|CI044457
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86477909|gb|CI120542.1|CI120542
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86592946|gb|CI270503.1|CI270503
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86827364|gb|CI270995.1|CI270995
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|29644585|gb|CB649592.1|CB649592
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|29629805|gb|CB634814.1|CB634814
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86903060|gb|CI324530.1|CI324530
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86479608|gb|CI122241.1|CI122241
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88837478|gb|CI078838.1|CI078838
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86874223|gb|CI335848.1|CI335848
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86478258|gb|CI120891.1|CI120891
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86481349|gb|CI123982.1|CI123982
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGCCAGTGACCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86481643|gb|CI124276.1|CI124276
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86479317|gb|CI121950.1|CI121950
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88267039|gb|CI378974.1|CI378974
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCACTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|87023326|gb|CI272154.1|CI272154
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86596849|gb|CI270645.1|CI270645
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGCTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|87039410|gb|CI194032.1|CI194032
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86482575|gb|CI125208.1|CI125208
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|87029814|gb|CI274495.1|CI274495
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86437268|gb|CI118990.1|CI118990
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88230047|gb|CI229923.1|CI229923
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86519307|gb|CI159513.1|CI159513
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88901905|gb|CI374513.1|CI374513
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86437377|gb|CI119099.1|CI119099
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88519405|gb|CI447059.1|CI447059
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTTTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86431019|gb|CI083442.1|CI083442
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|87040130|gb|CI193339.1|CI193339
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCTAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86436912|gb|CI118634.1|CI118634
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86519969|gb|CI160175.1|CI160175
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86517626|gb|CI157832.1|CI157832
EST:     TACGGGGCCTGCATACGTTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88320775|gb|CI527927.1|CI527927
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88262794|gb|CI364372.1|CI364372
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86260426|gb|CI066299.1|CI066299
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88198560|gb|CI198410.1|CI198410
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86480896|gb|CI123529.1|CI123529
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86513495|gb|CI156128.1|CI156128
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88989441|gb|CI043900.1|CI043900
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCCGTGAGCCAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|27554612|gb|CA998512.1|CA998512
EST:     AGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: AGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86482501|gb|CI125134.1|CI125134
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|16753685|gb|BM038064.1|BM038064
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCCGTTGGTTTGAAGGGCAGTGAGCCAATCATGTGAAGCCATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|33809595|gb|CF330690.1|CF330690
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|87022824|gb|CI269760.1|CI269760
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88233738|gb|CI233587.1|CI233587
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|89195756|gb|CI007175.1|CI007175
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|29676333|gb|CB672608.1|CB672608
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86882140|gb|CI325670.1|CI325670
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCACTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATTTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88490347|gb|CI427619.1|CI427619
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86827392|gb|CI272808.1|CI272808
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86514669|gb|CI157302.1|CI157302
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88515986|gb|CI443640.1|CI443640
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|33810852|gb|CF331317.1|CF331317
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|87035974|gb|CI190596.1|CI190596
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86852061|gb|CI317814.1|CI317814
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86517669|gb|CI157875.1|CI157875
EST:     TACGGGGCCTGCATACGTTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88842562|gb|CI081818.1|CI081818
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86520382|gb|CI160588.1|CI160588
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|89187335|gb|CI047402.1|CI047402
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86520199|gb|CI160405.1|CI160405
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88842807|gb|CI371707.1|CI371707
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|86518665|gb|CI158871.1|CI158871
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88233390|gb|CI233239.1|CI233239
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|87021512|gb|CI274119.1|CI274119
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88221458|gb|CI221414.1|CI221414
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88227001|gb|CI228481.1|CI228481
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
EST: gi|88230910|gb|CI228815.1|CI228815
EST:     TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCG                         GTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG
genomic: TACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 54 (upstream exon), 69 (downstream exon)
Score: 8

GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttc ... ctcattgcagGTCCAGTTGGTTTGAAGGGCAGTGAGCAAATCATGTGAAGCTATGTTTTGGTTTAAGGTTTAAAAGGGTTGAAGTCGAAGATGACCAGAATGAATTGTTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTACGGGGCCTGCATACATTTCCAGAAGATGAGCAAGTGGCTTGTCGTTCGgtacgatttcatactctggtgtaaaaagtaggagctgctattgctattttggtaattacggagtagttattttttgtttagaagttagtcaagttactat

- - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - -  AGCAAG