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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAGgttgatactagactattgttctaaaccactgtgattccctgcaaagtgaaaatctcagcttccgatatttacttgaattgtgtatttgtag

Basic information

species Oryza sativa
transcript LOC_Os08g32630.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g32630.5 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM5G851815_T02 (Zea mays), 5'ss of exon 15
AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAGgttgatactagactattgttctaaaccactgtgattccctgcaaagtgaaaatctcagcttccgatatttacttgaattgtgtatttgtag
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AAACTAGGGGATTCGGTACTTCGGCCATTTCTACAGgttgctgcttggacattgt----atgcgttgttatatcc---ataaagaaatacttgtctttc---actta-tgggactgcacatttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29642655|gb|CB647662.1|CB647662
EST:     AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAG                         GATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTA
genomic: AAACTTGGGGATTCAGTACTTCGGCCATTTCTCCAGgttgatacta ... gtatttgtagGATGTAATACAATTTGGACCTCTGGTTAAAACTCTGGGTCTA