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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCTACCTCCAGGGCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAATgtatgtctcgctcttccttaaccatagtagttggtatataggattttgaaatgtttatactattcataattttgcacatcttaactgcag

Basic information

species Oryza sativa
transcript LOC_Os08g10320.3
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29630668|gb|CB635677.1|CB635677
EST:     GCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAAAAT                         ATTATTCCTTTGCGGTACACTGTGGTAGTAACAGATCTATCACAGGCTCAG
genomic: GCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAATgtatgtctcg ... ttaactgcagATTATTCCTTTGCGGTAGACTGTGGTAGTAACAGATCTATCAGAGGCTCAG
EST: gi|29644124|gb|CB649131.1|CB649131
EST:     GCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAAT                         ATTATTCCTTTGCGGTAGACTGTGGTAGTAACAGATCTATCAGAGGCTCAG
genomic: GCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAATgtatgtctcg ... ttaactgcagATTATTCCTTTGCGGTAGACTGTGGTAGTAACAGATCTATCAGAGGCTCAG
EST: gi|88449939|gb|CI572070.1|CI572070
EST:     GCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAAT                         ATTATTCCTTTGCGGTAGACTGTGGTAGTAACAGATCTATCAGAGGCTCAG
genomic: GCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAATgtatgtctcg ... ttaactgcagATTATTCCTTTGCGGTAGACTGTGGTAGTAACAGATCTATCAGAGGCTCAG
EST: gi|58690195|gb|CK078882.1|CK078882
EST:     GCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAAT                         ATTATTCCTTTGCGGTAGACTGTGGTAGTAACAGATCTATCAGAGGCTCAG
genomic: GCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAATgtatgtctcg ... ttaactgcagATTATTCCTTTGCGGTAGACTGTGGTAGTAACAGATCTATCAGAGGCTCAG
EST: gi|88431028|gb|CI572018.1|CI572018
EST:     GCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAAT                         ATTATTCCTTTGCGGTAGACTGTGGTAGTAACAGATCTATCAGAGGCTCAG
genomic: GCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAATgtatgtctcg ... ttaactgcagATTATTCCTTTGCGGTAGACTGTGGTAGTAACAGATCTATCAGAGGCTCAG
EST: gi|29630383|gb|CB635392.1|CB635392
EST:     GCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAAT                         ATTATTCCTTTGCGGTAGACTGTGGTAGTAACAGATCTATCAGAGGCTCAG
genomic: GCTAAACTGCCTCCAGAAAGACACTCCATGTTTACGAGGTTCTCCAGAATgtatgtctcg ... ttaactgcagATTATTCCTTTGCGGTAGACTGTGGTAGTAACAGATCTATCAGAGGCTCAG