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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGACGCTTTGGACCAGATGGTCGACCCTGCACTCCAGGGGCTGTACCCTTCGAAATCGCTCTCCCGCTTCGCTGACGCGATCGCGCTCTGCGTTCAGgtcagaccaccatgatcagtgatcagccgatcacctccacatcagcttctcctttgctccccaaatgctccagttttcttttttttccatcttttgcacacttctgatcctgcttgctcctcaaccttttgtcgacag

Basic information

species Oryza sativa
transcript LOC_Os07g42626.3
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g42626.3 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G121573_T01 (Zea mays), 5'ss of exon 15
CATCGACGCTTTGGACCAGATGGTCGACCCTGCACTCCAGGGGCTGTACCCTTCGAAATCGCTCTCCCGCTTCGCTGACGCGATCGCGCTCTGCGTTCAGgtcagaccaccatgatcagtgatcagccgatcacctccacatcagcttctcctttgctccccaaatgctccagttttcttttttttccatcttttgcacacttctgatcctgcttgctcctcaaccttttgtcgacag
|||||||||  ||||||||||||||||||| || || || ||||||||||| || ||||| |||||||||||||| || || ||||| || || |||||||| |    |||||  ||| ||  |  || || |   | |    |   | ||     || |  |||||   | |       ||  |   | ||   |                                          
CATCGACGCGCTGGACCAGATGGTCGACCCCGCGCTGCAAGGGCTGTACCCGTCCAAATCCCTCTCCCGCTTCGCCGATGCCATCGCCCTTTGTGTTCAGgtgaagg-accatcttcattgtcc--cccat-attcctatgcga---tttctgacactgctgaaatg---cggacgctggttcctggaacctgcag------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87021411|gb|CI274018.1|CI274018
EST:     CTTCGAAATCGCTCTCCCGCTTCGCTGACGCGATCGCGCTCTGCGTTCAG                         TCCGAACCGGAGTTCAGGCCGCCGATGTCGGAGGTCGTCCAGTTGCTGGTC
genomic: CTTCGAAATCGCTCTCCCGCTTCGCTGACGCGATCGCGCTCTGCGTTCAGgtcagaccac ... ttgtcgacagTCCGAACCGGAGTTCAGGCCGCCGATGTCGGAGGTCGTCCAGTTGCTGGTC
EST: gi|87007926|gb|CI296904.1|CI296904
EST:     CTTCGAAATCGCTCTCCCGCTTCGCTGACGCGATCGCGCTCTGCGTTCAG                         TCCGAACCGGAGTTCAGGCCGCCGATGTCGGAGGTCGTCCAGTTGCTGGTC
genomic: CTTCGAAATCGCTCTCCCGCTTCGCTGACGCGATCGCGCTCTGCGTTCAGgtcagaccac ... ttgtcgacagTCCGAACCGGAGTTCAGGCCGCCGATGTCGGAGGTCGTCCAGTTGCTGGTC