1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CCTGGAATACAATAGACGCCCGGAGTTCTGTAATTTTCGACAGTCGTTTCTATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCGgtatgttcaatatctatctgctggtagtgattgctgaattttctcccttttggctaacaatgttttatatgcgtttgacag
species | Oryza sativa |
transcript | LOC_Os07g31460.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCG GTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGATEST: gi|157651519|gb|EX451153.1|EX451153
genomic: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCGgtatgttcaa ... cgtttgacagGTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGAT
EST: TAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTTG GTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGATEST: gi|29624539|gb|CB629550.1|CB629550
genomic: TAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCGgtatgttcaa ... cgtttgacagGTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGAT
EST: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCG GTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGATEST: gi|29676466|gb|CB672741.1|CB672741
genomic: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCGgtatgttcaa ... cgtttgacagGTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGAT
EST: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCG GTTTCGGTTTTTGCGAGTGAGAGAATTTAATGGCAATCCAAGGTTTCAGATEST: gi|27548254|gb|CA766230.2|CA766230
genomic: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCGgtatgttcaa ... cgtttgacagGTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGAT
EST: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCG GTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGATEST: gi|86900017|gb|CI300115.1|CI300115
genomic: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCGgtatgttcaa ... cgtttgacagGTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGAT
EST: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCG GTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGATEST: gi|29659966|gb|CB656241.1|CB656241
genomic: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCGgtatgttcaa ... cgtttgacagGTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGAT
EST: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCG GTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGATEST: gi|29621977|gb|CB626988.1|CB626988
genomic: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCGgtatgttcaa ... cgtttgacagGTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGAT
EST: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCG GTTTCGGTTTTTGCGAGTGAGAGAATTTAATGGCAATCCAAGGTTTCAGATEST: gi|29681352|gb|CB677627.1|CB677627
genomic: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCGgtatgttcaa ... cgtttgacagGTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGAT
EST: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCG GTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGAT
genomic: TATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCGgtatgttcaa ... cgtttgacagGTTTCGGTTTCTGCGAGTGAGAGAATCTAATGGCAATCCAAGGTTTCAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGGAATACAATAGACGCCCGGAGTTCTGTAATTTTCGACAGTCGTTTCTATAGGAAAACATTTACTGTGGACAAGAGATATAAAGCAAATGCTTTTCGgtatgttcaatatctatctgctggtagtgattgctgaattttctcccttttggctaacaatgttttatatgcgtttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA