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CAATAAAAAGTGGAAAGAAGGTTTTCATGTGACATCTATGGCCACCGCTGGAAATCGCTGGGGTGTAGTTATGTCAAGGAACTCAGGTTACTCTGAACAGgttagaataattgcttgacctagttcatattcagtccacaaatttggcaatttatattcctgtgagcattccattatttactgtagaatatatctacttatgaagctaacctttttctcatgccctttttag
species | Oryza sativa |
transcript | LOC_Os07g07560.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AATTCGCTGGGGTGTAGTTTATGTCAAGGAACTCAGGTTACTCTGAACAG CTTGTAGAATTGGATTTCCTATATCCAAGGTGAAGGCATCCATCGGCGATGEST: gi|88966779|gb|CI366002.1|CI366002
genomic: AA-TCGCTGGGGTGTAG-TTATGTCAAGGAACTCAGGTTACTCTGAACAGgttagaataa ... ccctttttagGTTGTAGAATTGGATTTCCTATATCCAA-GTGAAGGCATCCATCGGCGATG
EST: GAACTCAGG-TACTCTGAACAG G-TGTAGAATTGGATTTCCTATATCCAAATGAAGGCATCCATCGGCGATGGEST: gi|218490208|gb|FG966190.1|FG966190
genomic: GAACTCAGGTTACTCTGAACAGgttagaataa ... ccctttttagGTTGTAGAATTGGATTTCCTATATCCAAGTGAAGGCATCCATCGGCGATGG
EST: GAAATCGCTGGGGTGTAGTTATGTCAAGGAACTCAGGTTACTCTGAACAG GTTGTAGAATTGGATTTCCTATATCCAAGTGAAGGCATCCATCGGCGATGGEST: gi|86866762|gb|CI343562.1|CI343562
genomic: GAAATCGCTGGGGTGTAGTTATGTCAAGGAACTCAGGTTACTCTGAACAGgttagaataa ... ccctttttagGTTGTAGAATTGGATTTCCTATATCCAAGTGAAGGCATCCATCGGCGATGG
EST: GAAATCGCTGGGGTGTAGTTATGTCAAGGAACTCAGGTTACTCTGAACAG GTTGTAGAATTGGATTTCCTATATCCAAGTGAAGGCATCCATCGGCGATGG
genomic: GAAATCGCTGGGGTGTAGTTATGTCAAGGAACTCAGGTTACTCTGAACAGgttagaataa ... ccctttttagGTTGTAGAATTGGATTTCCTATATCCAAGTGAAGGCATCCATCGGCGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATAAAAAGTGGAAAGAAGGTTTTCATGTGACATCTATGGCCACCGCTGGAAATCGCTGGGGTGTAGTTATGTCAAGGAACTCAGGTTACTCTGAACAGgttagaataattgcttgacctagttcatattcagtccacaaatttggcaatttatattcctgtgagcattccattatttactgtagaatatatctacttatgaagctaacctttttctcatgccctttttag
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