Sequence
atgc intronic sequence ATGC exonic sequenceATTCAGCAAAAGATGTTGGAAAATGGAGATATGGTTGCAAACGACGATGAAATCACCCCAACAGTCTTGGTTCAGgtaagataatgaataagttaatatcattgtttgcacagtttgccaaaaaatctctatttactaaacattatgttactcatcaatcatggataattcaata...
Basic information
species | Oryza sativa |
transcript | LOC_Os07g06820.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G120329_T01 (Zea mays), 5'ss of exon 10
ATTCAGCAAAAGATGTTGGAAAATGGAGATATGGTTGCAAACGACGATGAAATCACCCCAACAGTCTTGGTTCAGgtaagataatgaataagttaatatcattgtttgcacagtttgccaaaaaatctctatttactaaacattatgttactcatcaatcatg--gataa--ttcaata--
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GCTCAGCAAAAGATTTTGGAAAATGGTGGTGCGGTTCCAAATGATGATGAAATTACTCCTACAGTCATGGTGCAGgtaagat------tagtttaatattgtcatctgcttgcttgtcaataccatgaacattcaatcattaacatcttaatagcacatcctgctgatagagctcactttc
upper sequence: LOC_Os07g06820.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G035098_T01 (Zea mays), 5'ss of exon 12
ATTCAGCAAAAGATGTTGGAAAATGGAGATATGGTTGCAAACGACGATGAAATCACCCCAACAGTCTTGGTTCAGgtaagataatgaataagttaatatcattgtttgcacagtttgccaaaa-----aatctctatttactaaacattatgttactcatcaatcatg--gataattcaata
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GCTCAGCAAAAGATTTTGGAAAACGGTGGTGCGGTTCCAAATGATGATGAAATTACTCCAACAGTCATGGTGCAGgtaagat------tagtttaatattgtcatctgctc-gcttgtcaataccatgaatgttcattcaatcattaacatcttaatagcacatcctgctgagggcccgttcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|428791|gb|D24947.1|D24947EST: GAGATATGGTTGCAAACGACGATGAAATCACCCCAACAGTCTTGGTTCAG ACGCTGGATTATGTGAAGCAATGCGAAG-AGANTATTGTCAACATGTCATT
genomic: GAGATATGGTTGCAAACGACGATGAAATCACCCCAACAGTCTTGGTTCAGgtaagataat ... tatttcatagACGCTGGATTATGTGAAGCAATGCGAAGCAGA-TATTGTCAACATGTCATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCAGCAAAAGATGTTGGAAAATGGAGATATGGTTGCAAACGACGATGAAATCACCCCAACAGTCTTGGTTCAGgtaagataatgaataagttaatatcattgtttgcacagtttgccaaaaaatctctatttactaaacattatgttactcatcaatcatggataattcaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat