1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AGCCTTCTCTTCGTTGCGTATTGCAAACTACAAATCATTCACAAGATTCCACATTAAGAAGGATGGTAACCTGGAAATATTCACGCTTGCAGTAGACAAGgtaacaattcaacttgattgcgttgatctcatccatttagaacttgaatttcaaaatccgctgatccatatcacccaaatatataagtgtcaatacatgtttgtgtacacagaaacaaagtacatatattatccatctttaaacacgccaatatggtgagcag
species | Oryza sativa |
transcript | LOC_Os07g01540.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TGGAAATATTCACGCTTCCAGTAGACAAG GTCCCAAAGGATTGGAAATTGGATCCCAAGTGGGAGCCAGAGGAAAGGAGCEST: gi|86478109|gb|CI120742.1|CI120742
genomic: TGGAAATATTCACGCTTGCAGTAGACAAGgtaacaattc ... tggtgagcagGTCCCAAAGGATTGGAAATTGGATCCCAAGTGGGAGGCAGAGGAAAGGAGG
EST: CATTAAGAAGGATGGTAACCTGGAAATATTCACGCTTGCAGTAGACCAAG GTCCCAAAGGATTGGAAATTGGATCCCAAGTGGGAGGCAGAGGAAAGGAGEST: gi|88907666|gb|CI091064.1|CI091064
genomic: CATTAAGAAGGATGGTAACCTGGAAATATTCACGCTTGCAGTAGA-CAAGgtaacaattc ... tggtgagcagGTCCCAAAGGATTGGAAATTGGATCCCAAGTGGGAGGCAGAGGAAAGGAG
EST: ACATTAAGAAGGATGGTAACCTGGAAATATTCACGCTTGCAGTAGACAAG GTCCCAAAGGATTGGAAATTGGATCCCAAGTGGGAGGCAGAGGAAAGGAGGEST: gi|86413365|gb|CI067770.1|CI067770
genomic: ACATTAAGAAGGATGGTAACCTGGAAATATTCACGCTTGCAGTAGACAAGgtaacaattc ... tggtgagcagGTCCCAAAGGATTGGAAATTGGATCCCAAGTGGGAGGCAGAGGAAAGGAGG
EST: ACATTAAGAAGGATGGTAACCTGGAAATATTCACGCTTGCAGTAGACAAG GTCCCAAAGGATTGGAAATTGGATCCCAAGTGGGAGGCAGAGGAAAGGAGGEST: gi|29683872|gb|CB680147.1|CB680147
genomic: ACATTAAGAAGGATGGTAACCTGGAAATATTCACGCTTGCAGTAGACAAGgtaacaattc ... tggtgagcagGTCCCAAAGGATTGGAAATTGGATCCCAAGTGGGAGGCAGAGGAAAGGAGG
EST: ACATTAAGAAGGATGGTAACCTGGAAATATTCACGCTTGCAGTAGACAAG GTCCCAAAGGATTGGAAATTGGATCCCAAGTGGGAGGCAGAGGAAAGGAGG
genomic: ACATTAAGAAGGATGGTAACCTGGAAATATTCACGCTTGCAGTAGACAAGgtaacaattc ... tggtgagcagGTCCCAAAGGATTGGAAATTGGATCCCAAGTGGGAGGCAGAGGAAAGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCTTCTCTTCGTTGCGTATTGCAAACTACAAATCATTCACAAGATTCCACATTAAGAAGGATGGTAACCTGGAAATATTCACGCTTGCAGTAGACAAGgtaacaattcaacttgattgcgttgatctcatccatttagaacttgaatttcaaaatccgctgatccatatcacccaaatatataagtgtcaatacatgtttgtgtacacagaaacaaagtacatatattatccatctttaaacacgccaatatggtgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG