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CCGCATCTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAGgtatttagtcgtttttgcctgatcgaaaactgcatttttttttgtgactctgagactaattctttgttaactcattgacag
species | Oryza sativa |
transcript | LOC_Os06g49990.3 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAG TGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCAEST: gi|88445930|gb|CI549653.1|CI549653
genomic: CTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAGgtatttagtc ... tcattgacagTGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCA
EST: CTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAG TGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCAEST: gi|313080000|gb|HO213320.1|HO213320
genomic: CTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAGgtatttagtc ... tcattgacagTGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCA
EST: CTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAG TGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCA
genomic: CTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAGgtatttagtc ... tcattgacagTGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCATCTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGACTCTAGAAAGgtatttagtcgtttttgcctgatcgaaaactgcatttttttttgtgactctgagactaattctttgttaactcattgacag
- - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - GCTGCT