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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGATGCGCTTGCCAAGATGGTTGATCCAGCAATGGATGGGATGTACCCTGCAAAATCACTCTCCCGTTTCGCTGACATAATTGCATTGTGTGTCCAGgtaatattcgttatctttcgcacatttctttgtcctgcatatgactacccatttcttgttcgcccaaaattgttcttacagcttctaatatgaacaactc...

Basic information

species Oryza sativa
transcript LOC_Os06g42800.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g42800.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G071573_T01 (Zea mays), 5'ss of exon 15
CATCGATGCGCTTGCCAAGATGGTTGATCCAGCAATGGATGGGATGTACCCTGCAAAATCACTCTCCCGTTTCGCTGACATAATTGCATTGTGTGTCCAGgtaatattcgttatctttcgcacatttctttgtcctgcatatgactacccatttcttgttcgcccaaaattgttcttacagctt----ctaatatgaacaactc--------
|||||||  ||| ||||||||||| ||||| ||| |||||||| |||||||||| || || |||||||||||||| |||||||| ||  | || ||||||||| | || ||     | |  |     | |   |   | |  ||   | | | | || | |    |   |||||||| |||       |||| |||  |  ||         
CATCGATCTGCTCGCCAAGATGGTCGATCCTGCACTGGATGGGCTGTACCCTGCCAAGTCCCTCTCCCGTTTCGCCGACATAATCGCCATCTGCGTCCAGgtactgttggtg---ctgcatatgcagcataaact--cctccgaactctcttcttttttgcaaagagccttgttctttcagaggtggactaagatggccttcttttttgcag

upper sequence: LOC_Os06g42800.1 (Oryza sativa), 5'ss of exon 15
lower sequence: PP1S284_52V6.1 (Physcomitrella patens), 5'ss of exon 16
CATCGATGCGCTTGCCAAGATGGTTGATCCAGCAATGGATGGGATGTACCCTGCAAAATCACTCTCCCGTTTCGCTGACATAATTGCATTGTGTGTCCAGgtaatattcgttatctttcgcacatttctttgtcctgcatatgactacccatttcttgttcgcccaaaattgttcttacagcttctaatatgaacaactc---------------------------------------------------------------
|||||| || || || | |||||| ||||||||| || | || ||||| ||||| ||||| |||||||||||||||||| |  ||||  | ||||||||||||   | |      | ||   || ||  ||| | |    |    ||  ||||   |    |   ||||      || |||||  |||   |||  |||                                                                
CATCGACGCTCTAGCAAGGATGGTGGATCCAGCATTGAAGGGCATGTATCCTGCCAAATCTCTCTCCCGTTTCGCTGACGTTGTTGCGCTTTGTGTCCAGgtatgctactcgtgttctcaatcaatttcttggcatattcactgataggcattatattcgagtggaaaaccaggttt-cagctcttaa--agaaagactttttcttcctggatctttagagcagactcgaaattacgtaacttgcttcattcctgttctgcag