1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ATTGGTGACTTATCTTTGTTGAGAGCAGAGACACACAAATTCGAGTCTCACTATACTGACAATCTTGTAGgtaagaccataagagtctcactatttctgctttggtaaaagtattcaatccaacccgtatgtccaatgtaatagtcaccttttgctacattgctcttcag
species | Oryza sativa |
transcript | LOC_Os06g11180.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GAGAGCAGAGACACACAAATTCGAGTCTCACTATACTGACAATCTTGTAG GAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAATEST: gi|88903654|gb|CI089192.1|CI089192
genomic: GAGAGCAGAGACACACAAATTCGAGTCTCACTATACTGACAATCTTGTAGgtaagaccat ... tgctcttcagGAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAAT
EST: GAGAGCAGAGACACACAAATTCGAGTCTCACTATACTGACAATCTTGTAG GAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAATEST: gi|86479713|gb|CI122346.1|CI122346
genomic: GAGAGCAGAGACACACAAATTCGAGTCTCACTATACTGACAATCTTGTAGgtaagaccat ... tgctcttcagGAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAAT
EST: GAGAGCAGAGACACACAAATTCGAGTCTCACTATACTGACAATCTTGTAG GAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAATEST: gi|29630392|gb|CB635401.1|CB635401
genomic: GAGAGCAGAGACACACAAATTCGAGTCTCACTATACTGACAATCTTGTAGgtaagaccat ... tgctcttcagGAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAAT
EST: GAGAGCAGAGACACACAAATTCGAGTCTCACTATACTGACAATCTTGTAG GAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAATEST: gi|29630391|gb|CB635400.1|CB635400
genomic: GAGAGCAGAGACACACAAATTCGAGTCTCACTATACTGACAATCTTGTAGgtaagaccat ... tgctcttcagGAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAAT
EST: GAGAGCAGAGACACACAAATTCGAGTCTCACTATACTGACAATCTTGTAG GAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAATEST: gi|86479598|gb|CI122231.1|CI122231
genomic: GAGAGCAGAGACACACAAATTCGAGTCTCACTATACTGACAATCTTGTAGgtaagaccat ... tgctcttcagGAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAAT
EST: AGAGCAGAGACACACAAATTCGAGTCTTCACTATACTGACAATCTTGTAG GAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAAT
genomic: AGAGCAGAGACACACAAATTCGAGTC-TCACTATACTGACAATCTTGTAGgtaagaccat ... tgctcttcagGAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGTGACTTATCTTTGTTGAGAGCAGAGACACACAAATTCGAGTCTCACTATACTGACAATCTTGTAGgtaagaccataagagtctcactatttctgctttggtaaaagtattcaatccaacccgtatgtccaatgtaatagtcaccttttgctacattgctcttcag
- - - - - - - - - - AGAGCA
- - - - - - - - - - - GAGCAG