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GGTTGGCTTGCCTAGTGGGAAATATACAGTTCAACTCTTCTTTGCAGAGATAGTTATAGAAAGTGGATCAGGAAGGCGTTTATTTAACATCGACATTCAGgtctgatcactctctctctctctctctctctctctctccaagtttaacaatcttaaagcaaaacaaatggcacatccagaccatatgggcaaaacatgaacaaaaatgtgtggttacctgcag
species | Oryza sativa |
transcript | LOC_Os06g07130.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TAGTTATAGAAAGTGGATCAGGAAGGCGTTTATTTAACATCGACATTCAG GATCGGAATATCATGACAGATTTTGACATTTCCAAGGAAGCAGGGGGTTCCEST: gi|286986|gb|D15792.1|D15792
genomic: TAGTTATAGAAAGTGGATCAGGAAGGCGTTTATTTAACATCGACATTCAGgtctgatcac ... ttacctgcagGATCGGAATATCATGACAGATTTTGACATTTCCAAGGAAGCAGGGGGTTCC
EST: TAGTTATAGAAAGTGGATCAGGAAGGCGTTTATTTAACATCGACATTCAG GATCGGAATATCATGACAGATTTTGACATTTCCAAGGAAGCAGGGGGTTCCEST: gi|29679066|gb|CB675341.1|CB675341
genomic: TAGTTATAGAAAGTGGATCAGGAAGGCGTTTATTTAACATCGACATTCAGgtctgatcac ... ttacctgcagGATCGGAATATCATGACAGATTTTGACATTTCCAAGGAAGCAGGGGGTTCC
EST: TAGTTATAGAAAGTGGATCAGGAAGGCGTTTATTTAACATCGACATTCAG GATCGGAATATCATGACAGATTTTGACATTTCCAAGGAAGCAGGGGGTTCCEST: gi|218501924|gb|FG968995.1|FG968995
genomic: TAGTTATAGAAAGTGGATCAGGAAGGCGTTTATTTAACATCGACATTCAGgtctgatcac ... ttacctgcagGATCGGAATATCATGACAGATTTTGACATTTCCAAGGAAGCAGGGGGTTCC
EST: TAGTTATAGAAAGTGGATCAGGAAGGCGTTTATTTAACATCGACATTCAG GATCGGAATATCATGACAGATTTTGACATTTCCAAGGAAGCAGGGGGTTCCEST: gi|29625290|gb|CB630301.1|CB630301
genomic: TAGTTATAGAAAGTGGATCAGGAAGGCGTTTATTTAACATCGACATTCAGgtctgatcac ... ttacctgcagGATCGGAATATCATGACAGATTTTGACATTTCCAAGGAAGCAGGGGGTTCC
EST: TAGTTATAGAAAGTGGATCAGGAAGGCGTTTATTTAACATCGACATTCAG GATCGGAATATCATGACAGATTTTGACATTTCCAAGGAAGCAGGGGGTTCC
genomic: TAGTTATAGAAAGTGGATCAGGAAGGCGTTTATTTAACATCGACATTCAGgtctgatcac ... ttacctgcagGATCGGAATATCATGACAGATTTTGACATTTCCAAGGAAGCAGGGGGTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGGCTTGCCTAGTGGGAAATATACAGTTCAACTCTTCTTTGCAGAGATAGTTATAGAAAGTGGATCAGGAAGGCGTTTATTTAACATCGACATTCAGgtctgatcactctctctctctctctctctctctctctccaagtttaacaatcttaaagcaaaacaaatggcacatccagaccatatgggcaaaacatgaacaaaaatgtgtggttacctgcag
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