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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGCAAGCACAGATATTCTGATGGATCTTCTATCAATTGGTTCTTCTCCAGTACAAAATGGCCCACCAACAGTATCAAACTTTAGCCTTCCTGGTCAAGgtaaaagttatcatgatgataatatttgcatgtttttcatatgttgctgatccaagcttacttatcttaataccatgcag

Basic information

species Oryza sativa
transcript LOC_Os06g07090.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g07090.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G030144_T02 (Zea mays), 5'ss of exon 14
---TCAGCAAGCACAGATATTCTGATGGATCTTCTATCAATTGGTTCTTCTCCAGTACAAAATGGCCCACCAACAGTATCAAACTTTAGCCTTCCTGGTCAAGgtaaaagttatcatgatgataatatttgcatgtttttcatatgttgctgatccaagcttacttatcttaataccatgcag---
   ||  ||||||| || |||||||||||||||||||| |||||||| ||| | ||||||||||| |||||||| |   |||||||||||||||||||   |||||    |     |   || ||| |     | ||||| |  |  |||  ||    ||||| ||||||  | ||||||| |   
CCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTGGTTCATCTTCTGTACAAAATGGACCACCAACGG---CAAACTTTAGCCTTCCTGGCATAGgta----tgtctgtatagacaatct----gttttttttagtttctgcc-atttctgcttatttatct-gacaccatgctgcag

upper sequence: LOC_Os06g07090.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G017421_T01 (Zea mays), 5'ss of exon 15
---TCAGCAAGCACAGATATTCTGATGGATCTTCTATCAATTGGTTCTTCTCCAGTACAAAATGGCCCACCAACAGTATCAAACTTTAGCCTTCCTGGTCAAGgtaaaagttatcatgatgataatatttg-catgtttttcatatgttgc-tgatccaagcttacttatcttaataccatgcag---
   ||  ||||||| || |||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||    ||||||||||||||||||||   ||||||||   |   |   ||  |||       ||||| |    | ||   | |||   ||||| ||||||  | ||| | | |   
CCGTCTACAAGCACTGACATTCTGATGGATCTTCTATCTATTGGTTCATCTCCTGTACAAAATGGCCCACCAACG---TCAAACTTTAGCCTTCCTGGCATAGgtaaaaaaaagtctagagagtatagacaatctgtttcttgagttttttgtaatctgtgcttatttatct-gacaccgtactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27546490|gb|CA764691.2|CA764691
EST:     AGTACAAAATGGCCCACCAACAGTATCAAACTTTAGCCTTCCTGGTCAAG                         CTGAGACTAAAGTTGCACCTGTTACACCCCAAGTTGTGGATCTTCTTGATG
genomic: AGTACAAAATGGCCCACCAACAGTATCAAACTTTAGCCTTCCTGGTCAAGgtaaaagtta ... taccatgcagCTGAGACTAAAGTTGCACCTGTTACACCCCAAGTTGTGGATCTTCTTGATG