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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGACTGAACTTGAAGAGGGCACTGGAACTGAAGCATCTGACAGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAGgtagggacgtagggccttttgacgttgcttaatggatacttttttctgcatattagcactatcatgcttgacatttccatctgtacacctcttgtttttgtgtttcaccattactctcattgtctttttcacagaag

Basic information

species Oryza sativa
transcript LOC_Os06g03676.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g03676.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G078458_T04 (Zea mays), 5'ss of exon 15
AATGACTGAACTTGAAGAGGGCACTGGAACTGAAGCATCTGACAGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAGgtagggacgtagggccttttgacgttgcttaatggatacttttttctgcatattagcactatcatgcttgacatttccatctgtacacctcttgtttttgtgtttcaccattactctcattgtctttttcacagaag
|||| ||||||||||||||||| ||||||| ||||||||||||  | |||| || ||| | ||||||  || | |  ||||||||    |||||| || |  |      |||||            | ||  |||||||| |||   ||   | | | | || |  ||| | | | |  |  ||   |   ||  |  ||| |  ||                       
AATGGCTGAACTTGAAGAGGGCTCTGGAACAGAAGCATCTGACGCCGAACTGCTCGAGCAGTTCGATTCCATTCAGCCAGAAGACTACGCGAGgtgggcatatcaatttttttgg-----------gcatttttttttct-cat-caagagttcttaagttttattttttcttatcttaaattcacatccatgcatggcactac-ac-----------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86524540|gb|CI164746.1|CI164746
EST:     AGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAGAAG                       
genomic: AGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAAC--G-AGgtagggacgt ... ttcacaga
EST: gi|89176289|gb|CI043310.1|CI043310
EST:     GAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAG                         TGACGAGAGCAACGAGACCAAGTCAAAAGTAAATATTAGGACGTGCATAGT
genomic: GAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAGgtagggacgt ... ttcacagaagTGACGAGAGCAACGAGACCAAGTCAAAAGTAAATATTAGGACGTGCATAGT
EST: gi|27548210|gb|CA766314.2|CA766314
EST:     AGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAGAAG                       
genomic: AGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAAC--G-AGgtagggacgt ... ttcacaga
EST: gi|89164839|gb|CI101927.1|CI101927
EST:     AGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAGAAG                       
genomic: AGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAAC--G-AGgtagggacgt ... ttcacaga
EST: gi|89174651|gb|CI110849.1|CI110849
EST:     AAGACGCAACGAGAAG                       
genomic: AAGACGCAAC--G-AGgtagggacgt ... ttcacaga
EST: gi|89166086|gb|CI103176.1|CI103176
EST:     AGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAGAAG                       
genomic: AGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAAC--G-AGgtagggacgt ... ttcacaga
EST: gi|86526395|gb|CI166601.1|CI166601
EST:     AGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAACGAGAAG                       
genomic: AGCCAACTACTTGAGAAATTCGATCTCAGTGATTCAGAAGACGCAAC--G-AGgtagggacgt ... ttcacaga