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GCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAGgtattgtataatccttcctgctaatattagctgagattattactgaaggcctagagcaaatttattgttgaatttgactgggagattgatgtatttgccttgcatgccttcag
species | Oryza sativa |
transcript | LOC_Os05g50280.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CCATGGATCNTAATGTCTGAG ATTCTNCCTGTAAATATCNAGAGCCTTGCTGGAAGCNTTGCAACCCTTGCAEST: gi|29632218|gb|CB637227.1|CB637227
genomic: CCATGGATCATAATGTCTGAGgtattgtata ... atgccttcagATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCA
EST: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAG ATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCAEST: gi|86426131|gb|CI071228.1|CI071228
genomic: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAGgtattgtata ... atgccttcagATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCA
EST: ATCATAATGTCTGAG ATTCTTCCTGTAGATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCAEST: gi|89182912|gb|CI045670.1|CI045670
genomic: ATCATAATGTCTGAGgtattgtata ... atgccttcagATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCA
EST: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAG ATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCAEST: gi|29678789|gb|CB675064.1|CB675064
genomic: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAGgtattgtata ... atgccttcagATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCA
EST: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAG ATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCAEST: gi|29678790|gb|CB675065.1|CB675065
genomic: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAGgtattgtata ... atgccttcagATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCA
EST: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAG ATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCAEST: gi|7274036|gb|AU083580.1|AU083580
genomic: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAGgtattgtata ... atgccttcagATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCA
EST: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAG ATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCAEST: gi|29674764|gb|CB671039.1|CB671039
genomic: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAGgtattgtata ... atgccttcagATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCA
EST: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAG ATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCAEST: gi|89170797|gb|CI040074.1|CI040074
genomic: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAGgtattgtata ... atgccttcagATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCA
EST: TACCATGGATCATAATGTCTGAG ATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCAEST: gi|58679421|gb|CK068108.1|CK068108
genomic: TACCATGGATCATAATGTCTGAGgtattgtata ... atgccttcagATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCA
EST: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAG ATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCA
genomic: TTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAGgtattgtata ... atgccttcagATTCTTCCTGTAAATATCAAGAGCCTTGCTGGAAGCGTTGCAACCCTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATTTGTGATTTCATTTTCTCTTGGTTTGGGAGCCATACCATGGATCATAATGTCTGAGgtattgtataatccttcctgctaatattagctgagattattactgaaggcctagagcaaatttattgttgaatttgactgggagattgatgtatttgccttgcatgccttcag
- - - - - - - - - - - - - - - - - - - - CATGGA