1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GCCATAGAGAAGATTAAATTTGCCAAGAACAAATCTTCCCAAGGAAGGTGAGACGTGAGCATTGTGgtacatttttatactttggttctaagagtgttgcatgcctatatcatttgttaaaccataccaactcttgaattaatgtgaccag
species | Oryza sativa |
transcript | LOC_Os05g46270.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ATTTGCCAAGAACAAATCTTCCCAAGGAAGGTGAGACGTGAGCATTGTG GCTCGAATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGEST: gi|88323977|gb|CI561386.1|CI561386
genomic: ATTTGCCAAGAACAAATCTTCCCAAGGAAGGTGAGACGTGAGCATTGTGgtacattttt ... atgtgaccagGCTCGAATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAG
EST: GGAAGGTGAGACGTGAGCATTGTG GCTCGAATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAGEST: gi|88842373|gb|CI081629.1|CI081629
genomic: GGAAGGTGAGACGTGAGCATTGTGgtacattttt ... atgtgaccagGCTCGAATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAG
EST: AATTTGCCAAGAACAAATCTTCCCAAGGAAGGTGAGACGTGAGCATTGTG GCTCGAATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAG
genomic: AATTTGCCAAGAACAAATCTTCCCAAGGAAGGTGAGACGTGAGCATTGTGgtacattttt ... atgtgaccagGCTCGAATCCTTCTTCAAGCCAGTTGTTAGCACATCAGTGCCTCTGAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATAGAGAAGATTAAATTTGCCAAGAACAAATCTTCCCAAGGAAGGTGAGACGTGAGCATTGTGgtacatttttatactttggttctaagagtgttgcatgcctatatcatttgttaaaccataccaactcttgaattaatgtgaccag
- - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - AAGGAA