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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTGAAACCGATCTCACTCCAAAGATATCTGACTTTGGACTCGCCAAGCTCTATGATGAGAAGCAGACTCATGTAAGCACAAGAATTGCGGGCACACTgtaagaacatttcaacatttctcttcttatgattgtaacatcaaaataaaagctacttttaacttgtgtggcctttgtcaag

Basic information

species Oryza sativa
transcript LOC_Os05g16430.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29624087|gb|CB629098.1|CB629098
EST:     CTCTATGATGAGAAGCAGACTCATGTAAGCACAAGAATTGCGGGCACACT                         TGGATATCTTGCTCCTGAATATGCAATGAGAGGCCGATTGACGGAAAAAGT
genomic: CTCTATGATGAGAAGCAGACTCATGTAAGCACAAGAATTGCGGGCACACTgtaagaacat ... ctttgtcaagTGGATATCTTGCTCCTGAATATGCAATGAGAGGCCGATTGACGGAAAAAGT
EST: gi|29677807|gb|CB674082.1|CB674082
EST:     CTCTATGATGAGAAGCAGACTCATGTAAGCACAAGAATTGCGGGCACACT                         TGGATATCTTGCTCCTGAATATGCAATGAGAGGCCGATTGACGGAAAAAGT
genomic: CTCTATGATGAGAAGCAGACTCATGTAAGCACAAGAATTGCGGGCACACTgtaagaacat ... ctttgtcaagTGGATATCTTGCTCCTGAATATGCAATGAGAGGCCGATTGACGGAAAAAGT
EST: gi|29677707|gb|CB673982.1|CB673982
EST:     CTCTATGATGAGAAGCAGACTCATGTAAGCACAAGAATTGCGGGCACACT                         TGGATATCTTGCTCCTGAATATGCAATGAGAGGCCGATTGACGGAAAAAGT
genomic: CTCTATGATGAGAAGCAGACTCATGTAAGCACAAGAATTGCGGGCACACTgtaagaacat ... ctttgtcaagTGGATATCTTGCTCCTGAATATGCAATGAGAGGCCGATTGACGGAAAAAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACTTGAAACCGATCTCACTCCAAAGATATCTGACTTTGGACTCGCCAAGCTCTATGATGAGAAGCAGACTCATGTAAGCACAAGAATTGCGGGCACACTgtaagaacatttcaacatttctcttcttatgattgtaacatcaaaataaaagctacttttaacttgtgtggcctttgtcaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC