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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCAGGCGGCATTTATCTTGAGCATTCCCAGAAGAAAGCCTGCTGATGAAACACAGGAAACCCTGAGGACATCTGCTTTCCCCAGCCAGCATGTGAAGgtaatttgattttctgtctaaattctactgaacagccatacttgtgcaactataatgatttaatatatctgcag

Basic information

species Oryza sativa
transcript LOC_Os05g11140.3
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 15
GGACCAGGCGGCATTTATCTTGAGCATTCCCAGAAGAAAGCCTGCTGATGAAACACAGGAAACCCTGAGGACATCTGCTTTCCCCAGCCAGCATGTGAAGgtaatttgattttctgtctaaattctactgaacagccatact--tgtgcaactataatgatt--taatatatctgcag
||| ||||| || |||||||||||||| |||| ||| || |||||||||||||||||||| || || || || ||||||||||||||||||||||||||||||| ||||| |||| |     ||   || |||  |    |     | ||  |  | |   |  | |||| | | |||
GGATCAGGCAGCGTTTATCTTGAGCATCCCCAAAAGGAAACCTGCTGATGAAACACAGGAGACTCTAAGAACGTCTGCTTTCCCCAGCCAGCATGTGAAGgtaacttgatattctttacctttttgtctaaacctcagatcgaacatccatttgcacttgctaatgatatgtttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87027514|gb|CI272279.1|CI272279
EST:     AAACACAGGAAACCCTGAGGACATCTGCTTTCCCCAGCCAGCATGTGAAG                         GAGAAATGGTCGAAGAATCTTTACCTAGCTTCCATTTGCTATGGAAGAACG
genomic: AAACACAGGAAACCCTGAGGACATCTGCTTTCCCCAGCCAGCATGTGAAGgtaatttgat ... atatctgcagGAGAAATGGTCGAAGAATCTTTACCTAGCTTCCATTTGCTATGGAAGAACG