Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCAGGCGGCATTTATCTTGAGCATTCCCAGAAGAAAGCCTGCTGATGAAACACAGGAAACCCTGAGGACATCTGCTTTCCCCAGCCAGCATGTGAAGgtaatttgattttctgtctaaattctactgaacagccatacttgtgcaactataatgatttaatatatctgcag

Basic information

species Oryza sativa
transcript LOC_Os05g11140.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 15
GGACCAGGCGGCATTTATCTTGAGCATTCCCAGAAGAAAGCCTGCTGATGAAACACAGGAAACCCTGAGGACATCTGCTTTCCCCAGCCAGCATGTGAAGgtaatttgattttctgtctaaattctactgaacagccatact--tgtgcaactataatgatt--taatatatctgcag
||| ||||| || |||||||||||||| |||| ||| || |||||||||||||||||||| || || || || ||||||||||||||||||||||||||||||| ||||| |||| |     ||   || |||  |    |     | ||  |  | |   |  | |||| | | |||
GGATCAGGCAGCGTTTATCTTGAGCATCCCCAAAAGGAAACCTGCTGATGAAACACAGGAGACTCTAAGAACGTCTGCTTTCCCCAGCCAGCATGTGAAGgtaacttgatattctttacctttttgtctaaacctcagatcgaacatccatttgcacttgctaatgatatgtttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29626917|gb|CB631928.1|CB631928
EST:     AAACACAGGAAACCCTGAGGACATCTGCTTTCCCCAGCCAGCATGTGAAG                         GAGAAATGGTCGAAGAATCTTTACCTAGCTTCCATTTGCTATGGAAGAACG
genomic: AAACACAGGAAACCCTGAGGACATCTGCTTTCCCCAGCCAGCATGTGAAGgtaatttgat ... atatctgcagGAGAAATGGTCGAAGAATCTTTACCTAGCTTCCATTTGCTATGGAAGAACG
EST: gi|88518503|gb|CI446157.1|CI446157
EST:     CAGCATGTGAAG                         GAGAAATGGTCGAAGAATCTTTACCTAGCTTCCATTTGCTATGGAAGAACG
genomic: CAGCATGTGAAGgtaatttgat ... atatctgcagGAGAAATGGTCGAAGAATCTTTACCTAGCTTCCATTTGCTATGGAAGAACG
EST: gi|88959819|gb|CI381697.1|CI381697
EST:     CCCAGCCAGCATGTGAAG                         GAGAAATGGTCGAAGAATCTTTACCTAGCTTCCATTTGCTATGGAAGAACG
genomic: CCCAGCCAGCATGTGAAGgtaatttgat ... atatctgcagGAGAAATGGTCGAAGAATCTTTACCTAGCTTCCATTTGCTATGGAAGAACG