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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTTGGATAGTTTAGCAGGTGAAATTGACATGAACTCTCAGTCAACATTTGAGAGATTGAACTCGCAAGTGCAATCACACACGTCATCTCTTGAGCAAgtaagcttacttcttttggcctgcttgtaacagcagtatgtattgcaatatttctgattgcccttcctattgatag

Basic information

species Oryza sativa
transcript LOC_Os05g02670.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g02670.2 (Oryza sativa), 5'ss of exon 16
lower sequence: GRMZM2G024576_T02 (Zea mays), 5'ss of exon 14
AGCTTTGGATAGTTTAGCAGGTGAAATTGACATGAACTCTCAGTCAACATTTGAGAGATTGAACTCGCAAGTGCAATCACACACGTCATCTCTTGAGCAAgtaagcttacttcttttggcctgcttgtaacagcagtatgtatt-gcaatatttctgattgccc-ttcctattgatag
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TGCTCTGGATGAATTAGCAGGTGAAATCGACATGAACTCGCGGACAACATTTGAGAGATTAAATTCACAGATACAGTCACACACATCAGCCCTTGAGAACgtaagttcgtttccgttggcctgat-gtgaacgcagtgggtttttgcagcatttctgactgtttacttctgttctaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56157706|gb|C25877.2|C25877
EST:     TTGAGAGATTGAACTCGCAAGTGCAATCACACACGTCATCTCTTGAGCAA                         TGTTTTGGAGGAATNGCTTCAGAAGCAGACAATTTGTTAAATGAGCTTCAG
genomic: TTGAGAGATTGAACTCGCAAGTGCAATCACACACGTCATCTCTTGAGCAAgtaagcttac ... ctattgatagTGTTTTGGAGGAATTGCTTCAGAAGCAGACAATTTGTTAAATGAGCTTCAG