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TGTATCGGGCAAGCATATGAGGACATACAGGCACAAAACCAACAATTGCTACAGCAGATTATTGAAAGAGATGATGATAATACCAAGgtagtgactcaatgatttctttaaagctattatctcagataatcctctcccaagcttatagttttataagagttcccatttaccactgtaccaaatctgg...
species | Oryza sativa |
transcript | LOC_Os04g46450.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ACCAACAATTGCTACAGCAGATTATTGAAAGAGATGATGATAATACCAAG ATTTTTATGGAGGGTGTTAAAGCAAAACAGACACAAGATGCTTTGCATTTGEST: gi|88360993|gb|CI625299.1|CI625299
genomic: ACCAACAATTGCTACAGCAGATTATTGAAAGAGATGATGATAATACCAAGgtagtgactc ... tacactgcagATTTTTATGGAGGGTGTTAAAGCAAAACAGACACAAGATGCTTTGCATTTG
EST: AC-AACAATTGCTACAGCAGATTATTGAAAGAGATGATGATAATACCACG ATTTTTATGGAGGGTGTTAAAGCAAAACAGACACAAGATGEST: gi|58659385|gb|CK048065.1|CK048065
genomic: ACCAACAATTGCTACAGCAGATTATTGAAAGAGATGATGATAATACCAAGgtagtgactc ... tacactgcagATTTTTATGGAGGGTGTTAAAGCAAAACAGACACAAGATG
EST: ACCAACAATTGCTACAGCAGATTATTGAAAGAGATGATGATAATACCAAG ATTTTTATGGAGGGTGTTAAAGCAAAACAGACACAAGATGCTTTGCATTTGEST: gi|25777950|gb|CA752700.1|CA752700
genomic: ACCAACAATTGCTACAGCAGATTATTGAAAGAGATGATGATAATACCAAGgtagtgactc ... tacactgcagATTTTTATGGAGGGTGTTAAAGCAAAACAGACACAAGATGCTTTGCATTTG
EST: ACCAACAATTGCTACAGCAGATTATTGAAAGAGATGATGATAATACCAAG ATTTTTATGGAGGGTGTTAAAGCAAAACAGACACAAGATGCTTTGCATTTGEST: gi|218487991|gb|FG954428.1|FG954428
genomic: ACCAACAATTGCTACAGCAGATTATTGAAAGAGATGATGATAATACCAAGgtagtgactc ... tacactgcagATTTTTATGGAGGGTGTTAAAGCAAAACAGACACAAGATGCTTTGCATTTG
EST: ACCAACAATTGCTACAGCAGATTATTGAAAGAGATGATGATAATACCAAG ATTTTTATGGAGGGTGTTAAAGCAAAACAGACACAAGATGCTTTGCATTTG
genomic: ACCAACAATTGCTACAGCAGATTATTGAAAGAGATGATGATAATACCAAGgtagtgactc ... tacactgcagATTTTTATGGAGGGTGTTAAAGCAAAACAGACACAAGATGCTTTGCATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTATCGGGCAAGCATATGAGGACATACAGGCACAAAACCAACAATTGCTACAGCAGATTATTGAAAGAGATGATGATAATACCAAGgtagtgactcaatgatttctttaaagctattatctcagataatcctctcccaagcttatagttttataagagttcccatttaccactgtaccaaatctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctccc