1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TTTTCATCCAAAGAAGACGGACCTTTTGTGCTCTTGTGATAGCAATGGTGAAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAGgtttgtggcgttttttccttagaatttgcttaacatcttttgctttttttttcttacaaagaaccaaggttgtgtaattcatagattcatctgtttgactctggtttttgttggacag
species | Oryza sativa |
transcript | LOC_Os04g43130.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAG GGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCAEST: gi|87015057|gb|CI273455.1|CI273455
genomic: AAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAGgtttgtggcg ... tgttggacagGGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCA
EST: GAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAG GGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCAEST: gi|29629861|gb|CB634870.1|CB634870
genomic: AAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAGgtttgtggcg ... tgttggacagGGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCA
EST: AAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAG GGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCAEST: gi|87021140|gb|CI271947.1|CI271947
genomic: AAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAGgtttgtggcg ... tgttggacagGGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCA
EST: AAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAG GGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCAEST: gi|86436746|gb|CI118468.1|CI118468
genomic: AAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAGgtttgtggcg ... tgttggacagGGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCA
EST: AAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAG GGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCAEST: gi|29623737|gb|CB628748.1|CB628748
genomic: AAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAGgtttgtggcg ... tgttggacagGGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCA
EST: AAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAG GGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCAEST: gi|218485242|gb|FG948157.1|FG948157
genomic: AAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAGgtttgtggcg ... tgttggacagGGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCA
EST: AAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAG GGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCA
genomic: AAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAGgtttgtggcg ... tgttggacagGGAGGTACTGCCCAAGTTCGATTTCAACCTAACACTGGACAGTTTCTCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTCATCCAAAGAAGACGGACCTTTTGTGCTCTTGTGATAGCAATGGTGAAATCCGGTACTGGAATGTGTCTCAGCTTAGCTGTATGCGTGCCATGAAGgtttgtggcgttttttccttagaatttgcttaacatcttttgctttttttttcttacaaagaaccaaggttgtgtaattcatagattcatctgtttgactctggtttttgttggacag
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