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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAGgtaaatgtgccaaaatttgtttcgttcaaagataatgagaacctacccccaaaaaaaaaaacatcacatatacaccttacgaaacgaatttctatcatca...

Basic information

species Oryza sativa
transcript LOC_Os04g11880.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g11880.3 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G040247_T01 (Zea mays), 5'ss of exon 17
GTTGGAATGCTGTTGGAACATACTGTTGGCAATCTTGATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAGgtaaatgt-gccaaaatttgtt-tcgttcaaagataatgagaacctacccccaaaaaaaaaaacatcacatatacaccttacgaaacgaatttctatcatca----------------------------------------------------
|| || |  || ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||  ||||||||||  ||||  |     |||||||| |  |     ||      |    |  | |   ||  |   ||| | |  || ||| ||    ||||||||  | | || ||                                                      
GTAGGGAATCTATTGGAACATACAGTTGGCAATCTTGATCCTCTGTACATTGTCAGTTTGGTTCCTGATGGCTTAGAAATACCTCGgtatgttccatcaaaatttatcgtaaaataactgagctacagaatttcttgcatgactgaaaccttggcaaatatact---cgaaacgatctgccatgattcttaatccaaccatttcatcccctggttgagtgttcactcatgcttttgatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55409184|gb|CV721560.1|CV721560
EST:     GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG                         GTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTC
genomic: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAGgtaaatgtgc ... cttttgatagGTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTC
EST: gi|218488547|gb|FG955820.1|FG955820
EST:     GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG                         GTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTC
genomic: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAGgtaaatgtgc ... cttttgatagGTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTC
EST: gi|58688189|gb|CK076876.1|CK076876
EST:     GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG                         GTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTC
genomic: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAGgtaaatgtgc ... cttttgatagGTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTC
EST: gi|58692342|gb|CK081029.1|CK081029
EST:     GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG                         GTTGCGGGATCGCCTTGTGAAAATTGTGACAGAC
genomic: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAGgtaaatgtgc ... cttttgatagGTTGCGGGATCGCCTTGTGAAAATTGTGACAGAC
EST: gi|218492660|gb|FG966164.1|FG966164
EST:     GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAG                         GTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTC
genomic: GATCCTTTGTACATTGTTAGTTTGGTTCCTGATGGGCTAGAAATACCAAGgtaaatgtgc ... cttttgatagGTTGCGGGATCGCCTTGTGAAAATTGTGACAGACTATCGAACAGAAACTTC