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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagattttatttgcatgacgtgggaacatatatttgcatgagagtggaatgggtgttatcctgaagttcgctatcatatcatgcag

Basic information

species Oryza sativa
transcript LOC_Os03g63020.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628841|gb|CB633852.1|CB633852
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTTTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29638287|gb|CB643296.1|CB643296
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29613155|gb|CB618168.1|CB618168
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29613395|gb|CB618408.1|CB618408
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGT---
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29644979|gb|CB649986.1|CB649986
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGT---
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29613120|gb|CB618133.1|CB618133
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|33801021|gb|CF326384.1|CF326384
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGT---
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29633044|gb|CB638053.1|CB638053
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGT---
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29666009|gb|CB662284.1|CB662284
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|34996388|gb|CF569133.1|CF569133
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29666008|gb|CB662283.1|CB662283
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|89167683|gb|CI018289.1|CI018289
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGT---
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|218497584|gb|FG955131.1|FG955131
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|8856640|gb|AU093958.1|AU093958
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGT---
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29663527|gb|CB659802.1|CB659802
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGT---
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|29656192|gb|CB652467.1|CB652467
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
EST: gi|33381337|gb|CF196680.1|CF196680
EST:     ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG                         GAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG
genomic: ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagatttt ... tatcatgcagGAAATTCTGCTGTACCCAGGATTTGAAAATCCTCCTGTGCAGTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAGgtgagattttatttgcatgacgtgggaacatatatttgcatgagagtggaatgggtgttatcctgaagttcgctatcatatcatgcag

- - - - - - - - -  AGAGCA