1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAGgtatgtatagtgcatatatgatcatctcctatcagttaatgcatagttgcataaggaactttctgccattttctccttaacactgccttgtatctctggtgtacttcag
species | Oryza sativa |
transcript | LOC_Os03g61950.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAG TTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTTEST: gi|86503558|gb|CI146191.1|CI146191
genomic: GAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAGgtatgtatag ... tgtacttcagTTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTT
EST: TCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAG TTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTTEST: gi|25806211|gb|CA762172.1|CA762172
genomic: TCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAGgtatgtatag ... tgtacttcagTTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTT
EST: TCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAG TTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTTEST: gi|27577131|gb|CA999825.1|CA999825
genomic: TCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAGgtatgtatag ... tgtacttcagTTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTT
EST: TCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAG TTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTTEST: gi|58676211|gb|CK064898.1|CK064898
genomic: TCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAGgtatgtatag ... tgtacttcagTTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTT
EST: TCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAG TTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTTEST: gi|27547744|gb|CA767413.2|CA767413
genomic: TCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAGgtatgtatag ... tgtacttcagTTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTT
EST: TCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAG TTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTT
genomic: TCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAGgtatgtatag ... tgtacttcagTTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAGgtatgtatagtgcatatatgatcatctcctatcagttaatgcatagttgcataaggaactttctgccattttctccttaacactgccttgtatctctggtgtacttcag
- - - - - - - - - - - - - - AAGGAA