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TAACAAAAAGTGGAAAGAAGGTTTCCATGTGACATCTATGGCTACTGCTGGAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAGgttaaaagatttcgatttaccaatccttgtgttcattctttctatgaatttggtggcttctcatatgccaaataacctgtacgtgataaaaaatggtata...
species | Oryza sativa |
transcript | LOC_Os03g57940.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAG GTGGTAGAGTTGGACTTTEST: gi|88247437|gb|CI247286.1|CI247286
genomic: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAGgttaaaagat ... caatgtgcagGTGGTAGAGTTGGACTTT
EST: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAG GTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGGEST: gi|87024580|gb|CI259295.1|CI259295
genomic: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAGgttaaaagat ... caatgtgcagGTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGG
EST: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAG GTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATTGGCGATGGEST: gi|88271635|gb|CI387688.1|CI387688
genomic: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAGgttaaaagat ... caatgtgcagGTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGG
EST: AAACCGTTGGGGACGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAG GTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGGEST: gi|88273426|gb|CI393832.1|CI393832
genomic: AAACCGTTGGGGA-GTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAGgttaaaagat ... caatgtgcagGTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGG
EST: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAG GTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGGEST: gi|87021813|gb|CI277980.1|CI277980
genomic: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAGgttaaaagat ... caatgtgcagGTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGG
EST: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAG GTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGGEST: gi|29616080|gb|CB621092.1|CB621092
genomic: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAGgttaaaagat ... caatgtgcagGTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGG
EST: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAG GTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGGEST: gi|58685128|gb|CK073815.1|CK073815
genomic: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAGgttaaaagat ... caatgtgcagGTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGG
EST: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAG GTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGGEST: gi|88269536|gb|CI380834.1|CI380834
genomic: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAGgttaaaagat ... caatgtgcagGTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGG
EST: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAG GTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGGEST: gi|58672924|gb|CK061610.1|CK061610
genomic: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAGgttaaaagat ... caatgtgcagGTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGG
EST: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAG GTGGTAGAGTTGGACTTTCTATATCCAAGTEST: gi|86412466|gb|CI017334.1|CI017334
genomic: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAGgttaaaagat ... caatgtgcagGTGGTAGAGTTGGACTTTCTATATCCAAGT
EST: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAG GTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGG
genomic: GAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAGgttaaaagat ... caatgtgcagGTGGTAGAGTTGGACTTTCTATATCCAAGTGAAGGGATCCATCGGCGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACAAAAAGTGGAAAGAAGGTTTCCATGTGACATCTATGGCTACTGCTGGAAACCGTTGGGGAGTTGTCATGTCAAGAAATGCAGGCTATTCCCATCAGgttaaaagatttcgatttaccaatccttgtgttcattctttctatgaatttggtggcttctcatatgccaaataacctgtacgtgataaaaaatggtata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat