1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTGAATGCTATTCAGATGAAGGAGACGGTTGAAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaaccatctaaacttgcaaacaagaacatcctttgaggacttctagttacacttgtccccgtttagttatcctcgatttttggtataagatgtt...
species | Oryza sativa |
transcript | LOC_Os03g57290.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|87029771|gb|CI274452.1|CI274452
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|58694714|gb|CK083401.1|CK083401
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|87013825|gb|CI271216.1|CI271216
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|86889987|gb|CI319976.1|CI319976
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|58684068|gb|CK072755.1|CK072755
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGT-AAACCCTCAGCCACEST: gi|89187076|gb|CI047143.1|CI047143
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|86482476|gb|CI125109.1|CI125109
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|38568751|gb|CD670966.1|CD670966
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|89178617|gb|CI391615.1|CI391615
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|89189344|gb|CI048883.1|CI048883
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|58658824|gb|CK047504.1|CK047504
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|58658361|gb|CK047041.1|CK047041
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|88844604|gb|CI020451.1|CI020451
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|88837448|gb|CI078808.1|CI078808
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|86535745|gb|CI175951.1|CI175951
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AGAAAACACAAGCACAACTGAGAGAGTATTCCAAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCACEST: gi|89181587|gb|CI113093.1|CI113093
genomic: AGAAAACACAAGCACAACTGAGAGAGTATTCC-AGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
EST: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAG GTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
genomic: AAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaac ... ttccgtgcagGTGGATGCTGCCATAGTTCGAATAATGAAGACACGTAAAACCCTCAGCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAATGCTATTCAGATGAAGGAGACGGTTGAAGAAAACACAAGCACAACTGAGAGAGTATTCCAGGACAGACAGTATCAGgtgcattaaccatctaaacttgcaaacaagaacatcctttgaggacttctagttacacttgtccccgtttagttatcctcgatttttggtataagatgtt
- - - - - - - - - - - - - - - AAGAAA