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CAATAGCTCCTTCACGTCTTGGTGGACAGATTGAAACAAAGAACCCTCCAGGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactatctttgttctataccatgtgactatatttgattttgaacatttattcctactattagcacaccaatttgtcagtattatcctgggatatga...
species | Oryza sativa |
transcript | LOC_Os03g43930.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87036584|gb|CI191206.1|CI191206
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87016506|gb|CI273716.1|CI273716
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87036221|gb|CI190843.1|CI190843
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|86436847|gb|CI118569.1|CI118569
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87039801|gb|CI194423.1|CI194423
genomic: GCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGGGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|88233296|gb|CI233145.1|CI233145
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: TTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|88983063|gb|CI020627.1|CI020627
genomic: TTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: ATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87027472|gb|CI272237.1|CI272237
genomic: ATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87039979|gb|CI194601.1|CI194601
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: ACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87034732|gb|CI189356.1|CI189356
genomic: ACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|86499474|gb|CI142107.1|CI142107
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|86480098|gb|CI122731.1|CI122731
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|86827312|gb|CI270963.1|CI270963
genomic: GTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGACCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87041845|gb|CI196467.1|CI196467
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|86478938|gb|CI121571.1|CI121571
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGTATTCEST: gi|88984269|gb|CI020184.1|CI020184
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|88197420|gb|CI196727.1|CI196727
genomic: GTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTAAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87036373|gb|CI190995.1|CI190995
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87038610|gb|CI192649.1|CI192649
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|88198258|gb|CI198108.1|CI198108
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87040785|gb|CI195407.1|CI195407
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|88197905|gb|CI197755.1|CI197755
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87039024|gb|CI193646.1|CI193646
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|86481983|gb|CI124616.1|CI124616
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87036851|gb|CI191473.1|CI191473
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: TGGGAGGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87040859|gb|CI195481.1|CI195481
genomic: TGGGA-GGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|86437481|gb|CI119203.1|CI119203
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87040080|gb|CI193289.1|CI193289
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87040822|gb|CI195444.1|CI195444
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87037761|gb|CI192383.1|CI192383
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|86855875|gb|CI271094.1|CI271094
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87022878|gb|CI269814.1|CI269814
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87039677|gb|CI194299.1|CI194299
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|86482094|gb|CI124727.1|CI124727
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87037625|gb|CI192247.1|CI192247
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGGGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|87037463|gb|CI192085.1|CI192085
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTCEST: gi|88197640|gb|CI197490.1|CI197490
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
EST: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCG ATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
genomic: GGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactat ... aaaatttcagATTCCACACTGGAGCGGATCTCCTTCGCACAGACTCACAAAGCACGGATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATAGCTCCTTCACGTCTTGGTGGACAGATTGAAACAAAGAACCCTCCAGGATCTCCTGAGGCCCATACGCTTGCAAGGTGGATTGGGAGGAGCTACCGgtatgactatctttgttctataccatgtgactatatttgattttgaacatttattcctactattagcacaccaatttgtcagtattatcctgggatatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT