Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAACCTCGTCGGCCTCGTCGGATTCTGCTTCGAGCAGGGCGAGCAGATGCTCGTCTACGAGTTCATGTCCGCCGGCACCCTCCGCGACAGCCTCTCCGgtaaaaccacaaaccacatttgtccgtgcgttcctgacgcgccgcgcgttcttgcacggcacgcgccctgaacttgttggatttttttctttgcag

Basic information

species Oryza sativa
transcript LOC_Os03g21230.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g21230.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G023715_T02 (Zea mays), 5'ss of exon 17
AAGAACCTCGTCGGCCTCGTCGGATTCTGCTTCGAGCAGGGCGAGCAGATGCTCGTCTACGAGTTCATGTCCGCCGGCACCCTCCGCGACAGCCTCTCCGgtaaa-accacaaaccacatttgtccgtgcgttcctgacgcgccgcgcgttcttgcacggcacgcgcc--ctgaacttgttggattttt---ttctttgcag
|||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| || |||||||||||| |||||||  || ||  || ||  ||     |  |     ||  |     || | |  || | | |   | |  |||     | || |  |      |   |||||
AAGAACCTCGTCGGCCTCCTCGGCTTCTGCTTCGAGCAGGGGGAGCAGATGCTCGTCTACGAGTTCATGTCAGGCGGCACGCTGCGCGACAGCCTCGCCGgtaaggacgacggacgactgtttcagattagaattggaaac----tgcatgccggcgctgaagctgtcagctgggtgggatgaaactggaaactgcatgcag

upper sequence: LOC_Os03g21230.1 (Oryza sativa), 5'ss of exon 15
lower sequence: AT1G79620.1 (Arabidopsis thaliana), 5'ss of exon 17
AAGAACCTCGTCGGCCTCGTCGGATTCTGCTTCGAGCAGGGCGAGCAGATGCTCGTCTACGAGTTCATGTCCGCCGGCACCCTCCGCGACAGCCTCTCCGgtaaaaccacaaaccacatttgtccgtgcgttcctgacgcgccgcgcgttcttgcacggcacgcgccctgaacttgttggatttttttctttgcag
|||||||| || || || ||||| |||||||||||||| ||||||||||| || |||||||| | |||||||  |||  | ||    || ||| |  ||||||   |   |||      | | |  |  || |   |     | |         |||   ||  | ||   || | |||  |||            
AAGAACCTAGTTGGGCTTGTCGGGTTCTGCTTCGAGCAAGGCGAGCAGATTCTAGTCTACGAATACATGTCCAACGGATCACTAAAAGATAGCTTAACCGgta---ctgaaaaat---ctggcctttaggtgctcaataaatcacaa------acacaaaacttgaccattacgtattgtttttag----------