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TGATGTGGTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGGgtaaattgtcaacttctccaatcaagcttttgtctacactttaatctcctcaccctgctacatatttgtccactgaagacaggatgaattttggataacc...
species | Oryza sativa |
transcript | LOC_Os03g20420.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGG GTTTAGTCCAGATGCCATAGTCTTCAACTCATGGCAGCEST: gi|86437525|gb|CI119247.1|CI119247
genomic: GTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGGgtaaattgtc ... tgttgaatagGTTTAGTCCAGATGCCATAGTCTTCAACTCATGGCAGC
EST: GTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGG GTTTAGTCCAGATGCCATAGTCTTCAACTCATGGCAGCACTATGGATGTCCEST: gi|29680538|gb|CB676813.1|CB676813
genomic: GTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGGgtaaattgtc ... tgttgaatagGTTTAGTCCAGATGCCATAGTCTTCAACTCATGGCAGCACTATGGATGTCC
EST: TGGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAA-GATTCGCGG GTTTAGTCCAGATGCCATAGTCTTCAACTCATGGCAGCACTATGGATGTCEST: gi|29645168|gb|CB650175.1|CB650175
genomic: TCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGA-TCGCGGgtaaattgtc ... tgttgaatagGTTTAGTCCAGATGCCATAGTCTTCAACTCATGGCAGCACTATGGATGTC
EST: GTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGG GTTTAGTCCAGATGCCATAGTCTTCAACTCATGGCAGCACTATGGATGTCCEST: gi|29676177|gb|CB672452.1|CB672452
genomic: GTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGGgtaaattgtc ... tgttgaatagGTTTAGTCCAGATGCCATAGTCTTCAACTCATGGCAGCACTATGGATGTCC
EST: GTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGG GTTTAGTCCAGATGCCATAGTCTTCAACTCATGGCAGCACTATGGATGTCCEST: gi|27554516|gb|CA998416.1|CA998416
genomic: GTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGGgtaaattgtc ... tgttgaatagGTTTAGTCCAGATGCCATAGTCTTCAACTCATGGCAGCACTATGGATGTCC
EST: GTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGG GTTTAGTCCAGATGCCATAGTCTTCAACTCATGGCAGCACTATGGATGTCC
genomic: GTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGGgtaaattgtc ... tgttgaatagGTTTAGTCCAGATGCCATAGTCTTCAACTCATGGCAGCACTATGGATGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGTGGTCGAGATGGCAAGTTGTGCTCCACTCTTCATAAATGACAACGATCGCGGgtaaattgtcaacttctccaatcaagcttttgtctacactttaatctcctcaccctgctacatatttgtccactgaagacaggatgaattttggataacc
- - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaccc