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CCCTCAGTCTGGGAAGCCAAATCAAGATCCTAACCAGGATGCACCTAACAGGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAGgtaccttgatttgtttaatgcttcaagatacgacttaatttgagtaaaaaaaaaggggatatcctctttatttcatatttggaaaagaaaaaaaatattaacatcatgatgagccaaatggctctaggaagatgatacaaacttgaggtacaattgttcattaactttgattttttttttatcag
species | Oryza sativa |
transcript | LOC_Os03g17540.3 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: GGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAG GGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCAEST: gi|88845563|gb|CI084488.1|CI084488
genomic: GGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAGgtaccttgat ... tttttatcagGGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCA
EST: GGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAG GGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCAEST: gi|94362447|gb|CI052442.1|CI052442
genomic: GGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAGgtaccttgat ... tttttatcagGGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCA
EST: GGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAG GGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCAEST: gi|86477251|gb|CI119884.1|CI119884
genomic: GGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAGgtaccttgat ... tttttatcagGGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATCA
EST: GAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCCAAG GGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATC
genomic: GAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAG-CAAGgtaccttgat ... tttttatcagGGAAAGTCTAGTTCCACTGAAACACCTGAAGGCTAAACTCCTGTCGAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTCAGTCTGGGAAGCCAAATCAAGATCCTAACCAGGATGCACCTAACAGGAGATTGGGCTTGCTTTCTAGGGGCCTTGGTTGGCTAGAGAAAAGCAAGgtaccttgatttgtttaatgcttcaagatacgacttaatttgagtaaaaaaaaaggggatatcctctttatttcatatttggaaaagaaaaaaaatattaacatcatgatgagccaaatggctctaggaagatgatacaaacttgaggtacaattgttcattaactttgattttttttttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG