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AATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatataccgctattgtatgcatctccaccatttcagtatccgtatggtttgtttgcatcccaccattatcttaaaattatgagctttaatattgtctttgttgatggtatcatgtag
species | Oryza sativa |
transcript | LOC_Os03g08070.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CGGGTTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCEST: gi|87030976|gb|CI270124.1|CI270124
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
EST: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCEST: gi|86477373|gb|CI120006.1|CI120006
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
EST: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCEST: gi|58611302|gb|CK039014.1|CK039014
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
EST: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCEST: gi|116875530|gb|EC366038.1|EC366038
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
EST: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCEST: gi|29681030|gb|CB677305.1|CB677305
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
EST: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTTTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCEST: gi|29622947|gb|CB627958.1|CB627958
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
EST: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCEST: gi|29662866|gb|CB659141.1|CB659141
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
EST: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCEST: gi|116875028|gb|EC365536.1|EC365536
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
EST: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTCEST: gi|87027726|gb|CI274290.1|CI274290
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
EST: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAG GGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
genomic: CGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatata ... tatcatgtagGGGGATTGATGGCCCTGAGCTCGATTTTTGTTGTCAGCAATTCTTTACTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTAGCCTGGGCTGTCGCATATAACATAGTAGCTATCCCTATTGCCGCCGGGGTGTTGCTGCCTCAATTTGATTTCGCCATGACACCATCTCTATCAGgtacaatataccgctattgtatgcatctccaccatttcagtatccgtatggtttgtttgcatcccaccattatcttaaaattatgagctttaatattgtctttgttgatggtatcatgtag
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